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Conserved domains on  [gi|1958770872|ref|XP_038964053|]
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leucine-rich repeat-containing protein 61 isoform X1 [Rattus norvegicus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1903219)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 49-166 2.16e-12

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd21340:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 220  Bit Score: 64.42  E-value: 2.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  49 LGECLNLEWLDLSGNALTHLGPLASLHQLA------------------------------VLNVSNNRLTGLEPLAACEN 98
Cdd:cd21340    64 LENLVNLKKLYLGGNRISVVEGLENLTNLEelhienqrlppgekltfdprslaalsnslrVLNISGNNIDSLEPLAPLRN 143

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958770872  99 LQSLNAAGNLLTNPGQL-QCLAGLQGLEHLRLRDplarlsNPLCVNPSYWAAVRELLPGLKVIDGERVS 166
Cdd:cd21340   144 LEQLDASNNQISDLEELlDLLSSWPSLRELDLTG------NPVCKKPKYRDKIILASKSLEVLDGKEIT 206
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 49-166 2.16e-12

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 64.42  E-value: 2.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  49 LGECLNLEWLDLSGNALTHLGPLASLHQLA------------------------------VLNVSNNRLTGLEPLAACEN 98
Cdd:cd21340    64 LENLVNLKKLYLGGNRISVVEGLENLTNLEelhienqrlppgekltfdprslaalsnslrVLNISGNNIDSLEPLAPLRN 143

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958770872  99 LQSLNAAGNLLTNPGQL-QCLAGLQGLEHLRLRDplarlsNPLCVNPSYWAAVRELLPGLKVIDGERVS 166
Cdd:cd21340   144 LEQLDASNNQISDLEELlDLLSSWPSLRELDLTG------NPVCKKPKYRDKIILASKSLEVLDGKEIT 206
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
49-131 8.92e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 64.57  E-value: 8.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  49 LGECLNLEWLDLSGNALTHLG-PLASLHQLAVLNVSNNRLTGL-EPLAACENLQSLNAAGNLLTN-PGQlqcLAGLQGLE 125
Cdd:COG4886   155 LGNLTNLKSLDLSNNQLTDLPeELGNLTNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDlPEP---LANLTNLE 231


                  ....*.
gi 1958770872 126 HLRLRD 131
Cdd:COG4886   232 TLDLSN 237
LRR_8 pfam13855
Leucine rich repeat;
54-109 3.47e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 46.36  E-value: 3.47e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  54 NLEWLDLSGNALTHLGP--LASLHQLAVLNVSNNRLTGLEP--LAACENLQSLNAAGNLL 109
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
53-146 1.00e-04

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 43.15  E-value: 1.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  53 LNLEWLDLSGNALTHLgPLASLHQLAVLNVSNNRLTGLePLAACENLQSLNAAGNLLTN-PGQLQclAGLQGLEhlRLRD 131
Cdd:PRK15370  325 PGLKTLEAGENALTSL-PASLPPELQVLDVSKNQITVL-PETLPPTITTLDVSRNALTNlPENLP--AALQIMQ--ASRN 398

                          90
                  ....*....|....*
gi 1958770872 132 PLARLSNPLcvnPSY 146
Cdd:PRK15370  399 NLVRLPESL---PHF 410
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 49-166 2.16e-12

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 64.42  E-value: 2.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  49 LGECLNLEWLDLSGNALTHLGPLASLHQLA------------------------------VLNVSNNRLTGLEPLAACEN 98
Cdd:cd21340    64 LENLVNLKKLYLGGNRISVVEGLENLTNLEelhienqrlppgekltfdprslaalsnslrVLNISGNNIDSLEPLAPLRN 143

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958770872  99 LQSLNAAGNLLTNPGQL-QCLAGLQGLEHLRLRDplarlsNPLCVNPSYWAAVRELLPGLKVIDGERVS 166
Cdd:cd21340   144 LEQLDASNNQISDLEELlDLLSSWPSLRELDLTG------NPVCKKPKYRDKIILASKSLEVLDGKEIT 206
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
49-131 8.92e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 64.57  E-value: 8.92e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  49 LGECLNLEWLDLSGNALTHLG-PLASLHQLAVLNVSNNRLTGL-EPLAACENLQSLNAAGNLLTN-PGQlqcLAGLQGLE 125
Cdd:COG4886   155 LGNLTNLKSLDLSNNQLTDLPeELGNLTNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDlPEP---LANLTNLE 231


                  ....*.
gi 1958770872 126 HLRLRD 131
Cdd:COG4886   232 TLDLSN 237
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
49-131 1.78e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 63.41  E-value: 1.78e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  49 LGECLNLEWLDLSGNALTHLG-PLASLHQLAVLNVSNNRLTGLEPLAACENLQSLNAAGNLLTNpgqLQCLAGLQGLEHL 127
Cdd:COG4886   201 LGNLTNLEELDLSGNQLTDLPePLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTD---LPPLANLTNLKTL 277


                  ....
gi 1958770872 128 RLRD 131
Cdd:COG4886   278 DLSN 281
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
35-141 2.37e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 63.03  E-value: 2.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  35 LLKLRGLGVVDLGCLGECLNLEWLDLSGNALTHLGP-LASLHQLAVLNVSNNRLTGL-EPLAACENLQSLNAAGNLLTN- 111
Cdd:COG4886    95 LTNLTELDLSGNEELSNLTNLESLDLSGNQLTDLPEeLANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDl 174

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1958770872 112 PGQlqcLAGLQGLEHLRLRD-PLARLSNPLC 141
Cdd:COG4886   175 PEE---LGNLTNLKELDLSNnQITDLPEPLG 202
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
49-211 1.93e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 60.33  E-value: 1.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  49 LGECLNLEWLDLSGNALTHLGPLASLHQLAVLNVSNNRLTGLEPLAACENLQSLNAAGNLLTNPgqlqCLAGLQGLEHLR 128
Cdd:COG4886   224 LANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDL----KLKELELLLGLN 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872 129 LRDPLARLSNPLCVNPSYWAAVRELLPGLKVIDGERVSGRGSELYQLCRDLDSSLRSSTSLGPRAIEVQPWVEPGYWESW 208
Cdd:COG4886   300 SLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATL 379


                  ...
gi 1958770872 209 PIR 211
Cdd:COG4886   380 LTL 382
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 30-128 4.01e-08

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 52.48  E-value: 4.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  30 LDSILLLKLRGLGVVDLGCLGECLNLEWLDLSGNALTHLGPLASLHQLAVLNVSNNRLTGLEPLAACENLQSLNAAGNll 109
Cdd:cd21340     1 LKRITHLYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGN-- 78

                          90
                  ....*....|....*....
gi 1958770872 110 tnpgQLQCLAGLQGLEHLR 128
Cdd:cd21340    79 ----RISVVEGLENLTNLE 93
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
30-140 1.10e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 52.24  E-value: 1.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  30 LDSILLLKLRGLGVVDLGCLGECLNLEWLDLSGNALTHLGPLASLHQLAVLNVSNNRLTGLEpLAACENLQSLNAAGNLL 109
Cdd:COG4886   227 LTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLK-LKELELLLGLNSLLLLL 305

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1958770872 110 TNPGQLQCLAGLQGLEHLRLRDPLARLSNPL 140
Cdd:COG4886   306 LLLNLLELLILLLLLTTLLLLLLLLKGLLVT 336
LRR_8 pfam13855
Leucine rich repeat;
54-109 3.47e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 46.36  E-value: 3.47e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  54 NLEWLDLSGNALTHLGP--LASLHQLAVLNVSNNRLTGLEP--LAACENLQSLNAAGNLL 109
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
LRR_9 pfam14580
Leucine-rich repeat;
36-165 4.02e-07

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 48.99  E-value: 4.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  36 LKLRGLGVVDLGCLGECLN-LEWLDLSGNALTHLGPLASLHQLAVLNVSNNRLT----GLEplAACENLQSLNAAGNLLT 110
Cdd:pfam14580  24 LDLRGYKIPIIENLGATLDqFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICrigeGLG--EALPNLTELILTNNNLQ 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958770872 111 NPGQLQCLAGLQGLEHLRLrdplarLSNPLCVNPSYWAAVRELLPGLKVIDGERV 165
Cdd:pfam14580 102 ELGDLDPLASLKKLTFLSL------LRNPVTNKPHYRLYVIYKVPQLRLLDFRKV 150
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
53-146 1.00e-04

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 43.15  E-value: 1.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872  53 LNLEWLDLSGNALTHLgPLASLHQLAVLNVSNNRLTGLePLAACENLQSLNAAGNLLTN-PGQLQclAGLQGLEhlRLRD 131
Cdd:PRK15370  325 PGLKTLEAGENALTSL-PASLPPELQVLDVSKNQITVL-PETLPPTITTLDVSRNALTNlPENLP--AALQIMQ--ASRN 398

                          90
                  ....*....|....*
gi 1958770872 132 PLARLSNPLcvnPSY 146
Cdd:PRK15370  399 NLVRLPESL---PHF 410
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 54-94 1.73e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 38.38  E-value: 1.73e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1958770872  54 NLEWLDLSGNALTHLGPLASLHQLAVLNVS-NNRLTGLEPLA 94
Cdd:pfam12799   2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSgNNKITDLSDLA 43
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 54-110 5.17e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 40.99  E-value: 5.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958770872  54 NLEWLDLSGNALTHLGP--LASLHQLAVLNVSNNRLTGLEP--LAACENLQSLNAAGNLLT 110
Cdd:PLN00113  476 RLENLDLSRNQFSGAVPrkLGSLSELMQLKLSENKLSGEIPdeLSSCKKLVSLDLSHNQLS 536
LRR_8 pfam13855
Leucine rich repeat;
41-87 5.54e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 37.12  E-value: 5.54e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1958770872  41 LGVVDLGCLGECLNLEWLDLSGNALTHLGP--LASLHQLAVLNVSNNRL 87
Cdd:pfam13855  13 LTSLDDGAFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 76-107 1.30e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 35.68  E-value: 1.30e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958770872  76 QLAVLNVSNNRLTGLEPLAACENLQSLNAAGN 107
Cdd:pfam12799   2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 3-103 2.40e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 38.23  E-value: 2.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958770872   3 PPGEKpgeaeaLIITPQLLKSHSGefaldSILLLKLRGLGVVDLGCLGECLNLEWLDLSGNALTHL----GPLASLHQLA 78
Cdd:cd21340   103 PPGEK------LTFDPRSLAALSN-----SLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLeellDLLSSWPSLR 171

                          90       100       110
                  ....*....|....*....|....*....|
gi 1958770872  79 VLNVSNNRLTGL-----EPLAACENLQSLN 103
Cdd:cd21340   172 ELDLTGNPVCKKpkyrdKIILASKSLEVLD 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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