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Conserved domains on  [gi|1958773604|ref|XP_038964828|]
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protein O-mannosyl-transferase TMTC1 isoform X2 [Rattus norvegicus]

Protein Classification

transmembrane and TPR repeat-containing protein( domain architecture ID 13750405)

transmembrane and TPR repeat-containing (TMTC) protein functions as a protein O-mannosyl-transferase, catalyzing the transfer of mannosyl residues to the hydroxyl group of serine or threonine residues

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 529-760 1.07e-39

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 148.34  E-value: 1.07e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 529 ESLFRLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFAD 605
Cdd:COG2956    32 EEALELDPETVEAHLALGNLyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 606 AYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSL 685
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958773604 686 GENSMAEEWYRRALQVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQrDLRLALAQVLAVMGQTKEAEK 760
Cdd:COG2956   192 GDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALA 266
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 351-425 6.30e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


:

Pssm-ID: 462468  Cd Length: 75  Bit Score: 133.04  E-value: 6.30e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958773604 351 GGTMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPITLCYDWQVGSIPLVETIWDVRNLATILLAVVMA 425
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 645-900 7.53e-36

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 137.17  E-value: 7.53e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 645 AVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVART-AEVLSPLGALYYNTGRHKE 723
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 724 ALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLK 803
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 804 PKDPKVISELfftkGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLkE 883
Cdd:COG2956   175 PDCARALLLL----AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-L 249

                         250
                  ....*....|....*..
gi 1958773604 884 NLAKLDRLERRLQEVRE 900
Cdd:COG2956   250 ALADLLERKEGLEAALA 266
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 529-760 1.07e-39

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 148.34  E-value: 1.07e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 529 ESLFRLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFAD 605
Cdd:COG2956    32 EEALELDPETVEAHLALGNLyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 606 AYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSL 685
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958773604 686 GENSMAEEWYRRALQVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQrDLRLALAQVLAVMGQTKEAEK 760
Cdd:COG2956   192 GDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALA 266
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 351-425 6.30e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 133.04  E-value: 6.30e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958773604 351 GGTMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPITLCYDWQVGSIPLVETIWDVRNLATILLAVVMA 425
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 645-900 7.53e-36

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 137.17  E-value: 7.53e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 645 AVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVART-AEVLSPLGALYYNTGRHKE 723
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 724 ALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLK 803
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 804 PKDPKVISELfftkGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLkE 883
Cdd:COG2956   175 PDCARALLLL----AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-L 249

                         250
                  ....*....|....*..
gi 1958773604 884 NLAKLDRLERRLQEVRE 900
Cdd:COG2956   250 ALADLLERKEGLEAALA 266
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 500-904 3.12e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 122.50  E-value: 3.12e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 500 ATSLMASTVLLLllfswKTVKQNEIWLSResLFRLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNL 576
Cdd:TIGR02917 331 ARRLLASIQLRL-----GRVDEAIATLSP--ALGLDPDDPAALSLLGEAylaLGDFEKAAEYLAKATELDPENAAARTQL 403

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 577 GNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEK 656
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 657 AVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQ 735
Cdd:TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKnLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 736 PSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVISELFF 815
Cdd:TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 816 TkgnQLREQNlLDKAFESYEAAVTLDPD-------QAQAWMN---------------------------MGGIRHIQGSY 861
Cdd:TIGR02917 644 A---YAVMKN-YAKAITSLKRALELKPDnteaqigLAQLLLAakrtesakkiakslqkqhpkaalgfelEGDLYLRQKDY 719

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1958773604 862 VPARVYYERALRLVPESkllkENLAKLDRLERRLQEVRERDQT 904
Cdd:TIGR02917 720 PAAIQAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKT 758
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 645-877 2.93e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 83.59  E-value: 2.93e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 645 AVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQ-----------VART--------- 704
Cdd:TIGR02917  29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSlgypknqvlplLARAyllqgkfqq 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 705 ----------------AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSE 768
Cdd:TIGR02917 109 vldelpgktllddegaAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 769 EPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKViseLFFtKGNQLREQNLLDKAFESYEAAVTLDPDQAQAW 848
Cdd:TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV---LLA-LATILIEAGEFEEAEKHADALLKKAPNSPLAH 264

                         250       260
                  ....*....|....*....|....*....
gi 1958773604 849 MNMGGIRHIQGSYVPARVYYERALRLVPE 877
Cdd:TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPE 293
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 551-802 1.26e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 69.58  E-value: 1.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 551 DMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPD-FADAYSSLASLLAEqerfKEAEDVYQA 629
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGG----EEALQYYEK 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 630 GIkncpdssdlhnnyavflvdsgfpEKAVAHYQQAIQLSPShhvAVVNLGRLHRSLGEN--SMAE--------------- 692
Cdd:cd24142    91 GI-----------------------EILEEELQALQAASAE---AEEEAEELKRKLSSAlcALAEiymtdlcdepdaeqr 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 693 -EWY-RRALQVART-AEVLSPLGALYYNTGRHKEALEVYREAVSL---------------------QPSqRDLRLALAQV 748
Cdd:cd24142   145 cEELiTKALELDPTnPEALQTLASLRISQQRPDEAKEALRRSLELwkdlkeedeeeaeedeaeeedVPS-YEFRISLAKL 223

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958773604 749 LAVMGQTKEAEKITSHIVSEEPRCLE-------CYRLLS--AIYSKQEHHEKALEAIEKALQL 802
Cdd:cd24142   224 LIELEMYEEALEVLEQLLDEDDEDVEvwyllgwAYYLLGekEQEEAAELLRDARELLEKALKL 286
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 553-901 1.44e-11

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 68.57  E-value: 1.44e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  553 AEAKMyyQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDfADAYSSLASLLA---------------EQ 617
Cdd:PRK11447   288 AIPEL--QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKvnrywlliqqgdaalKA 364

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  618 ERFKEAEDVYQAGIKNCPDSSdlhnnYAVF-LVDSGFPEK----AVAHYQQAIQLSPSHHVAVVNLGRLHR--------- 683
Cdd:PRK11447   365 NNLAQAERLYQQARQVDNTDS-----YAVLgLGDVAMARKdyaaAERYYQQALRMDPGNTNAVRGLANLYRqqspekala 439

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  684 ---SLG---ENSMAEewYRRALQVARtaevLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKE 757
Cdd:PRK11447   440 fiaSLSasqRRSIDD--IERSLQNDR----LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  758 AEKITSHIVSEEPRCLEcYRLLSAIY-SKQEHHEKALEAIEkALQ-------LKPKDPKVISELFFTKGNQLREQ----- 824
Cdd:PRK11447   514 ADALMRRLAQQKPNDPE-QVYAYGLYlSGSDRDRAALAHLN-TLPraqwnsnIQELAQRLQSDQVLETANRLRDSgkeae 591

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958773604  825 --NLLDKAFESYEAAVTLdPDQAQAwmnmggirhiQGSYVPARVYYERALRLVPESKLLKENLAKLDRLERRLQEVRER 901
Cdd:PRK11447   592 aeALLRQQPPSTRIDLTL-ADWAQQ----------RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 594-856 5.48e-09

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 59.45  E-value: 5.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 594 KESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHV 673
Cdd:NF033758   76 KAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALYQDVLKRYPDDAS 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 674 AVVNLGRLHRSLGENSMAEEWYRRALQvaRTAEVLSPLGAL---YYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLA 750
Cdd:NF033758  156 SRARLAEIYRQTGDHDKAMELSRAALM--RDPQSTTALKVMmrsYLDRKQLAMAKLVALRAVKIDQNDPELHHTVGLILL 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 751 VMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKA 830
Cdd:NF033758  234 QEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLRRILQADGKNAAAHLNL----GVAYKGQGQYDKA 309

                         250       260
                  ....*....|....*....|....*.
gi 1958773604 831 FESYEAAVTLDPDQAQAWMNMGGIRH 856
Cdd:NF033758  310 MQEYDEAEKLDPELAAIYLNRAIILH 335
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 554-802 2.03e-08

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 56.94  E-value: 2.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 554 EAKMYYQRALQLHP--QHNR---ALFNLGNLLKSQEKTEEAIVLLKESIK------YGPDFADAYSSLASLLAEQERFKE 622
Cdd:pfam17874  19 RALELAEQALALLPedDLLArglATFVLGEAYLCLGDLDAALQAMREAEAlarradSPHVTLWALLQQGEILRAQGRLHQ 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 623 AEDVYQAGIKNCPDSS--------DLHNNYAVFLVDSGFPEKAVAHYQQAIQL----SPSHHV-AVVNLGRLHRSLGENS 689
Cdd:pfam17874  99 ALETYQQALQLARDHGlqhlplhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqwEPDAAVdAYVLLARIALAQGELE 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 690 MAEEWYRRALQVARTAEVLSPLGA-------LYYNTGRHKEALEVYREAVSLQPS------QRDLRLaLAQVLAVMGQTK 756
Cdd:pfam17874 179 EALTLLRRAELLARQSFFHVDWLAnaervrvRLWLARGDLRAAVRWLRAAEPPSDadnhflERELRN-LARVLLALGRFD 257

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1958773604 757 EAEKITSHIVS---EEPRCLECYR---LLSAIYSKQEHHEKALEAIEKALQL 802
Cdd:pfam17874 258 DALSLLERLQNlaeQLGRVRSLIEnliLQALALLALGRPDEALQALLDALSL 309
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 715-853 3.93e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 48.13  E-value: 3.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 715 YY-------NTGRHKEALEVYREAVSLQPSQRDlRlalAQVLAVMGqtkeaekitshivseeprclecyrllsAIYSKQE 787
Cdd:PRK02603   38 YYrdgmsaqADGEYAEALENYEEALKLEEDPND-R---SYILYNMG---------------------------IIYASNG 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958773604 788 HHEKALEAIEKALQLKPKDP---KVISELFFTKGNQLREQ-------NLLDKAFESYEAAVTLDPD---QAQAWMNMGG 853
Cdd:PRK02603   87 EHDKALEYYHQALELNPKQPsalNNIAVIYHKRGEKAEEAgdqdeaeALFDKAAEYWKQAIRLAPNnyiEAQNWLKTTG 165
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 564-766 2.67e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.99  E-value: 2.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 564 QLHPQHNRALFNLGNLLKSQEKTEEAIVL-------LKESIKYGPDFAD---AYSSLASLLAEQERFKEA----EDVYQA 629
Cdd:NF040586  428 PDDRQTLRLRFHLANALRSLGRYEEARELdedtlerQRRVLGLGEDHPHtlmTAGGLGADLRALGRFREAleldEETLER 507

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 630 ----GIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQ-----LSPSHH---VAVVNLGRLHRSLGENSMA----EE 693
Cdd:NF040586  508 hrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRrrrrvLGPDHPrtlLSANNLARDLRELGRYAEAldllEE 587

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 694 WYRRALQVARTAEVLSPLGAL------YYNTGRHKEALE----VYREAVSLQ----PSQRDLRLALAQVLAVMGQTKEAE 759
Cdd:NF040586  588 ALERYREVLGGPDHPDTLRAAkslavaLRRAGRLEEALElaedTYERYRRRFgpdhPDTLAAALSLANDLRALGDADEAR 667


                  ....*..
gi 1958773604 760 KITSHIV 766
Cdd:NF040586  668 ELAREVL 674
TPR_11 pfam13414
TPR repeat;
818-859 2.97e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.69  E-value: 2.97e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1958773604 818 GNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQG 859
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 786-901 4.73e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.39  E-value: 4.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 786 QEHHEKALEAIEKALQLKPKDPKVIsELFftkGNQLREQNLLDKAFESYEAAVTLDPDQ-AQAWMNMGGIrhIQGSyvPA 864
Cdd:cd24142    13 QGNFELALKFLQRALELEPNNVEAL-ELL---GEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGGE--EA 84

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958773604 865 RVYYERALRLVpeSKLLKENLAKLDRLERRLQEVRER 901
Cdd:cd24142    85 LQYYEKGIEIL--EEELQALQAASAEAEEEAEELKRK 119
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 535-760 9.07e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.98  E-value: 9.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 535 YPRHASALNNLG---TLTKDMAEAKMYYQRALQLH-----PQHNRALFNLGNL---LKSQEKTEEAIVLLKESIKY---- 599
Cdd:NF040586  516 HPRTLRAANNLAvslRLLGDYREALELDREVLRRRrrvlgPDHPRTLLSANNLardLRELGRYAEALDLLEEALERyrev 595

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 600 --GPDFAD---AYSSLASLLAEQERFKEA----EDVYQA-----GIKNcPDSSDLHNNYAVFLVDSGFPEKA-------V 658
Cdd:NF040586  596 lgGPDHPDtlrAAKSLAVALRRAGRLEEAlelaEDTYERyrrrfGPDH-PDTLAAALSLANDLRALGDADEArelarevL 674

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 659 AHYQQAIQLS-PSHHVAVVNLGRLHRSLGENSMAEEWYRRALqvARTAEVLSP-----------LGALYYNTGRHKEAL- 725
Cdd:NF040586  675 DRYRRVLGEDhPFTLACRNNLAVLLRALGDPEEARELAEAAL--EGLRERLGPdhpytlaaavnLANDLAALGDLDAALg 752

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1958773604 726 -------EVYREAVSLQPSQRDLRLA----LAQVLAVMGQTKEAEK 760
Cdd:NF040586  753 eealerlRRLLGEDLRAGPDHPDTLAcaanLALDLRATGRTEEAEE 798
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 691-758 9.32e-04

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 40.36  E-value: 9.32e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958773604  691 AEEW---YRRALQVARtAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEA 758
Cdd:smart01043  45 DEDWaeaERERLRELR-LEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEA 114
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 774-806 2.19e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 2.19e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1958773604  774 ECYRLLSAIYSKQEHHEKALEAIEKALQLKPKD 806
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 529-760 1.07e-39

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 148.34  E-value: 1.07e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 529 ESLFRLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFAD 605
Cdd:COG2956    32 EEALELDPETVEAHLALGNLyrrRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 606 AYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSL 685
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958773604 686 GENSMAEEWYRRALQVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQrDLRLALAQVLAVMGQTKEAEK 760
Cdd:COG2956   192 GDYEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALA 266
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
533-771 3.08e-38

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 143.22  E-value: 3.08e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 533 RLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSS 609
Cdd:COG0457     2 ELDPDDAEAYNNLGLAyrrLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 610 LASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENS 689
Cdd:COG0457    82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 690 MAEEWYRRALQVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEE 769
Cdd:COG0457   162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241


                  ..
gi 1958773604 770 PR 771
Cdd:COG0457   242 QY 243
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 574-838 2.78e-37

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 141.41  E-value: 2.78e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 574 FNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGF 653
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 654 PEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVA-RTAEVLSPLGALYYNTGRHKEALEVYREAV 732
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 733 SLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPkvise 812
Cdd:COG2956   172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD----- 246

                         250       260
                  ....*....|....*....|....*.
gi 1958773604 813 LFFTKGNQLREQNLLDKAFESYEAAV 838
Cdd:COG2956   247 LLLALADLLERKEGLEAALALLERQL 272
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 531-801 3.89e-37

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 141.02  E-value: 3.89e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 531 LFRLYPRHASALNNLgtLTKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSL 610
Cdd:COG2956     5 VAAALGWYFKGLNYL--LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 611 ASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSM 690
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 691 AEEWYRRALQVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEE 769
Cdd:COG2956   163 AIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1958773604 770 PRCLEcYRLLSAIYSKQEHHEKALEAIEKALQ 801
Cdd:COG2956   243 PSDDL-LLALADLLERKEGLEAALALLERQLR 273
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 351-425 6.30e-37

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 133.04  E-value: 6.30e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958773604 351 GGTMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPITLCYDWQVGSIPLVETIWDVRNLATILLAVVMA 425
Cdd:pfam08409   1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
563-803 9.86e-37

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 138.60  E-value: 9.86e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 563 LQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHN 642
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 643 NYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVA-RTAEVLSPLGALYYNTGRH 721
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 722 KEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQ 801
Cdd:COG0457   161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                  ..
gi 1958773604 802 LK 803
Cdd:COG0457   241 YQ 242
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 645-900 7.53e-36

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 137.17  E-value: 7.53e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 645 AVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVART-AEVLSPLGALYYNTGRHKE 723
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDR 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 724 ALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLK 803
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 804 PKDPKVISELfftkGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLkE 883
Cdd:COG2956   175 PDCARALLLL----AELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-L 249

                         250
                  ....*....|....*..
gi 1958773604 884 NLAKLDRLERRLQEVRE 900
Cdd:COG2956   250 ALADLLERKEGLEAALA 266
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 678-900 3.01e-34

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 132.55  E-value: 3.01e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 678 LGRLHRSLGENSMAEEWYRRALQV-ARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTK 756
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELdPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 757 EAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYEA 836
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL----AELYLEQGDYDEAIEALEK 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958773604 837 AVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPES----KLLKENLAKLDRLERRLQEVRE 900
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYlpalPRLAELYEKLGDPEEALELLRK 237
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 529-735 2.67e-32

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 126.77  E-value: 2.67e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 529 ESLFRLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFAD 605
Cdd:COG2956    66 QKLLERDPDRAEALLELAQDylkAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 606 AYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSL 685
Cdd:COG2956   146 AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1958773604 686 GENSMAEEWYRRALQVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQ 735
Cdd:COG2956   226 GDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 523-729 4.80e-32

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 133.19  E-value: 4.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 523 EIWLSRESLFRLYPRHASALNNLGtltkDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPD 602
Cdd:COG3914    69 AAAAALLLLAALLELAALLLQALG----RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 603 FADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLH 682
Cdd:COG3914   145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1958773604 683 RSLGENSMAEEWYRRALQVARTAEVLSPLGALYYNTGRHKEALEVYR 729
Cdd:COG3914   225 RQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALAR 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
665-897 2.77e-29

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 117.42  E-value: 2.77e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 665 IQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRL 743
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 744 ALAQVLAVMGQtkeaekitshivseeprclecyrllsaiyskqehHEKALEAIEKALQLKPKDPkvisELFFTKGNQLRE 823
Cdd:COG0457    81 NLGLALQALGR----------------------------------YEEALEDYDKALELDPDDA----EALYNLGLALLE 122

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958773604 824 QNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLKENLAKLDRLERRLQE 897
Cdd:COG0457   123 LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVL 196
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
635-847 1.12e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 115.49  E-value: 1.12e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 635 PDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVA-RTAEVLSPLGA 713
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDpDDAEALNNLGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 714 LYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKAL 793
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958773604 794 EAIEKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYEAAVTLDPDQAQA 847
Cdd:COG0457   165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 500-904 3.12e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 122.50  E-value: 3.12e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 500 ATSLMASTVLLLllfswKTVKQNEIWLSResLFRLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNL 576
Cdd:TIGR02917 331 ARRLLASIQLRL-----GRVDEAIATLSP--ALGLDPDDPAALSLLGEAylaLGDFEKAAEYLAKATELDPENAAARTQL 403

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 577 GNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEK 656
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 657 AVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQ 735
Cdd:TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKnLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 736 PSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVISELFF 815
Cdd:TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 816 TkgnQLREQNlLDKAFESYEAAVTLDPD-------QAQAWMN---------------------------MGGIRHIQGSY 861
Cdd:TIGR02917 644 A---YAVMKN-YAKAITSLKRALELKPDnteaqigLAQLLLAakrtesakkiakslqkqhpkaalgfelEGDLYLRQKDY 719

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 1958773604 862 VPARVYYERALRLVPESkllkENLAKLDRLERRLQEVRERDQT 904
Cdd:TIGR02917 720 PAAIQAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKT 758
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 536-765 1.57e-26

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 115.86  E-value: 1.57e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 536 PRHASALNNLGTLTKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLK---------ESIKYGPDFADA 606
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALlalaageaaAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 607 YSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLG 686
Cdd:COG3914    81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 687 ENSMAEEWYRRALQVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHI 765
Cdd:COG3914   161 RLEEAIAALRRALELDpDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 550-901 4.95e-25

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 112.10  E-value: 4.95e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 550 KDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQA 629
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 630 GIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVARTA-EVL 708
Cdd:TIGR02917 219 AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYlPAL 298

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 709 SPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEH 788
Cdd:TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 789 HEKALEAIEKALQLKPKDPKVISELFFTKGNQLREQnlldKAFESYEAAVTLD--------------------------- 841
Cdd:TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS----EAIADLETAAQLDpelgradlllilsylrsgqfdkalaaa 454

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958773604 842 -------PDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLKENLAKLDRLERRLQEVRER 901
Cdd:TIGR02917 455 kklekkqPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
732-900 1.35e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 103.55  E-value: 1.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 732 VSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPkvis 811
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDA---- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 812 ELFFTKGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLKENLAKLDRL 891
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156


                  ....*....
gi 1958773604 892 ERRLQEVRE 900
Cdd:COG0457   157 LGRYEEALE 165
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 568-700 2.45e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 99.50  E-value: 2.45e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 568 QHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVF 647
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958773604 648 LVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQ 700
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 487-903 7.33e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 108.25  E-value: 7.33e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 487 GLSKLCAGLSRCGATSLMASTVL--------LLLLFSWktVKQNEIWLSRESLFRL---YPRHASALNNLGT---LTKDM 552
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQLdpelgradLLLILSY--LRSGQFDKALAAAKKLekkQPDNASLHNLLGAiylGKGDL 481

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 553 AEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIK 632
Cdd:TIGR02917 482 AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 633 NCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVA-RTAEVLSPL 711
Cdd:TIGR02917 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQpDSALALLLL 641

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 712 GALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEK 791
Cdd:TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 792 ALEAIEKALQLKPKDPKVI---SELFFTKGNQ---------LRE-----------------QNLLDKAFESYEAAVTLDP 842
Cdd:TIGR02917 722 AIQAYRKALKRAPSSQNAIklhRALLASGNTAeavktleawLKThpndavlrtalaelylaQKDYDKAIKHYQTVVKKAP 801

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958773604 843 DQAQAWMNMGGIRHiQGSYVPARVYYERALRLVPeskllkENLAKLDRLERRLQEVRERDQ 903
Cdd:TIGR02917 802 DNAVVLNNLAWLYL-ELKDPRALEYAERALKLAP------NIPAILDTLGWLLVEKGEADR 855
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 550-671 1.54e-23

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 97.18  E-value: 1.54e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 550 KDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQA 629
Cdd:COG4783    18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEK 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1958773604 630 GIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSH 671
Cdd:COG4783    98 ALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 550-760 1.50e-22

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 104.01  E-value: 1.50e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 550 KDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQA 629
Cdd:TIGR02917 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 630 GIKNCPDSSDL--------------------------HNNYAVFLV-------DSGFPEKAVAHYQQAIQLSPSHHVAVV 676
Cdd:TIGR02917 729 ALKRAPSSQNAiklhrallasgntaeavktleawlktHPNDAVLRTalaelylAQKDYDKAIKHYQTVVKKAPDNAVVLN 808

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 677 NLGRLHRSLgENSMAEEWYRRALQVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQT 755
Cdd:TIGR02917 809 NLAWLYLEL-KDPRALEYAERALKLApNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887


                  ....*
gi 1958773604 756 KEAEK 760
Cdd:TIGR02917 888 AEARK 892
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 604-848 3.46e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 102.38  E-value: 3.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 604 ADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHR 683
Cdd:COG3914    10 AALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQ 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 684 SLGENSMAEEWYRRALQVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKIT 762
Cdd:COG3914    90 ALGRYEEALALYRRALALNpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 763 SHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVISELFFTKGNQLREQNLldKAFESYEAAVTLDP 842
Cdd:COG3914   170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY--DRFEELLAALARGP 247


                  ....*.
gi 1958773604 843 DQAQAW 848
Cdd:COG3914   248 SELSPF 253
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 536-888 1.43e-21

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 100.93  E-value: 1.43e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 536 PRHASALNNLGTLT---KDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLAS 612
Cdd:TIGR02917 156 PRSLYAKLGLAQLAlaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 613 LLAEQERFKEAEDVYQAGIKNCPDSSDLHnnYAVFLVD--SGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSM 690
Cdd:TIGR02917 236 ILIEAGEFEEAEKHADALLKKAPNSPLAH--YLKALVDfqKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 691 AEEWYRRALQ-----------------------------------VARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQ 735
Cdd:TIGR02917 314 AYQYLNQILKyapnshqarrllasiqlrlgrvdeaiatlspalglDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 736 PSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPkvisELFF 815
Cdd:TIGR02917 394 PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA----SLHN 469

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958773604 816 TKGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLKENLAKL 888
Cdd:TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 674-806 1.65e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 88.33  E-value: 1.65e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 674 AVVNLGRLHRSLGENSMAEEWYRRALQVART-AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVM 752
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958773604 753 GQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKD 806
Cdd:COG4783    86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 737-878 2.65e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 87.94  E-value: 2.65e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 737 SQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPkvisELFFT 816
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP----EARLN 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958773604 817 KGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPES 878
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 531-845 2.83e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 96.69  E-value: 2.83e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 531 LFRLYPRHASALNNLGTLTKDMAEAKMYYQRALQL-----------------------HPQHNRALFNLGNLLKSQEKTE 587
Cdd:TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALaqyylgkgqlkkalailneaadaAPDSPEAWLMLGRAQLAAGDLN 618

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 588 EAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQL 667
Cdd:TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 668 SPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQ 747
Cdd:TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAE 778

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 748 VLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHhEKALEAIEKALQLKPKDPKVISelffTKGNQLREQNLL 827
Cdd:TIGR02917 779 LYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILD----TLGWLLVEKGEA 853

                         330
                  ....*....|....*...
gi 1958773604 828 DKAFESYEAAVTLDPDQA 845
Cdd:TIGR02917 854 DRALPLLRKAVNIAPEAA 871
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 674-877 2.95e-20

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 96.22  E-value: 2.95e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 674 AVVNLGRLHRSLGENSMAEEWYRRALQVARTAEVLSPLGALYYntgrhkEALEVYREAVSLQPSQRDLRLALAQVLAVMG 753
Cdd:COG3914    19 AAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLA------LAAGEAAAAAAALLLLAALLELAALLLQALG 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 754 QTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFES 833
Cdd:COG3914    93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFA----EAYLNLGEALRRLGRLEEAIAA 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1958773604 834 YEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPE 877
Cdd:COG3914   169 LRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 766-888 1.50e-19

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 85.44  E-value: 1.50e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 766 VSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYEAAVTLDPDQA 845
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL----AEALLAAGDTEEAEELLERALALDPDNP 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1958773604 846 QAWMNMGGIRHIQGSYVPARVYYERALRLVPES---KLLKENLAKL 888
Cdd:COG4235    86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 639-771 4.49e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 84.47  E-value: 4.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 639 DLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVART-AEVLSPLGALYYN 717
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLK 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958773604 718 TGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPR 771
Cdd:COG4783    85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 529-637 9.64e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 83.32  E-value: 9.64e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 529 ESLFRLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFAD 605
Cdd:COG4783    28 EKALELDPDNPEAFALLGEIllqLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1958773604 606 AYSSLASLLAEQERFKEAEDVYQAGIKNCPDS 637
Cdd:COG4783   108 AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 702-844 9.74e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 83.32  E-value: 9.74e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 702 ARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSA 781
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958773604 782 IYSKQEHHEKALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYEAAVTLDPDQ 844
Cdd:COG4783    81 ALLKAGDYDEALALLEKALKLDPEHP----EAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 691-807 2.37e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 81.98  E-value: 2.37e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 691 AEEWYRRALQVA-RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEE 769
Cdd:COG4235     2 AIARLRQALAANpNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958773604 770 PRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDP 807
Cdd:COG4235    82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 583-750 2.98e-18

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 84.70  E-value: 2.98e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 583 QEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQ 662
Cdd:TIGR02521  44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 663 QAI--QLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVART-AEVLSPLGALYYNTGRHKEA---LEVYREAVSLQP 736
Cdd:TIGR02521 124 QAIedPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQrPESLLELAELYYLRGQYKDArayLERYQQTYNQTA 203

                         170
                  ....*....|....*.
gi 1958773604 737 sqRDLRLA--LAQVLA 750
Cdd:TIGR02521 204 --ESLWLGirIARALG 217
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
504-733 2.33e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 81.89  E-value: 2.33e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 504 MASTVLLLLLFSWKTVKQNEIWLSR----ESLFRLYPRHASALNNLGTLTKDMAEAKMYYQRAL--QLHPQHNRALFNLG 577
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILlaalLFAAVLALAIALADLALALAAAALAAAALAAERIDraLALPDLAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 578 NLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKA 657
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958773604 658 VAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWyrralqvartaevLSPLGALYYNTGRHKEALEVYREAVS 733
Cdd:COG4785   161 IADLEKALELDPNDPERALWLYLAERKLDPEKALALL-------------LEDWATAYLLQGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 554-669 2.89e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 78.89  E-value: 2.89e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 554 EAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKN 633
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1958773604 634 CPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSP 669
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 588-702 4.88e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 78.12  E-value: 4.88e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 588 EAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQL 667
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1958773604 668 SPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVA 702
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
550-636 4.95e-17

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 77.13  E-value: 4.95e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 550 KDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVlLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQA 629
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                  ....*..
gi 1958773604 630 GIKNCPD 636
Cdd:COG3063    85 ALELDPS 91
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 691-900 2.90e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 83.50  E-value: 2.90e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 691 AEEWYRRALQVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEP 770
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 771 RCLECYRLLsaiysKQEHHEKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMN 850
Cdd:COG3914    81 LELAALLLQ-----ALGRYEEALALYRRALALNPDNAEALFNL----GNLLLALGRLEEALAALRRALALNPDFAEAYLN 151

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1958773604 851 MGGIRHIQGSYVPARVYYERALRLVPESKLLKENLAKLDRLERRLQEVRE 900
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIA 201
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 645-877 2.93e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 83.59  E-value: 2.93e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 645 AVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQ-----------VART--------- 704
Cdd:TIGR02917  29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSlgypknqvlplLARAyllqgkfqq 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 705 ----------------AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSE 768
Cdd:TIGR02917 109 vldelpgktllddegaAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 769 EPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKViseLFFtKGNQLREQNLLDKAFESYEAAVTLDPDQAQAW 848
Cdd:TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV---LLA-LATILIEAGEFEEAEKHADALLKKAPNSPLAH 264

                         250       260
                  ....*....|....*....|....*....
gi 1958773604 849 MNMGGIRHIQGSYVPARVYYERALRLVPE 877
Cdd:TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPE 293
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 551-700 4.63e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 76.54  E-value: 4.63e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 551 DMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAG 630
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 631 IKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQ 700
Cdd:COG5010    81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 533-639 8.75e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 74.66  E-value: 8.75e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 533 RLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSS 609
Cdd:COG4235    11 AANPNDAEGWLLLGRAylrLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90

                          90       100       110
                  ....*....|....*....|....*....|
gi 1958773604 610 LASLLAEQERFKEAEDVYQAGIKNCPDSSD 639
Cdd:COG4235    91 LGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 509-635 1.02e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 75.38  E-value: 1.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 509 LLLLLFSWKTVKQNEIWLSRESLFRLYPRHASALNNLGtltkDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEE 588
Cdd:COG5010    31 LAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG----DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1958773604 589 AIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCP 635
Cdd:COG5010   107 AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
613-705 1.48e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 72.90  E-value: 1.48e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 613 LLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAhYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAE 692
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|...
gi 1958773604 693 EWYRRALQVARTA 705
Cdd:COG3063    80 AYLERALELDPSA 92
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 534-809 1.52e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 81.28  E-value: 1.52e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 534 LYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSL 610
Cdd:TIGR02917 596 AAPDSPEAWLMLGRAqlaAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 611 ASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYA-VFLVDSGFPEkAVAHYQQAIQLSPSHHvAVVNLGRLHRSLGENS 689
Cdd:TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGdLYLRQKDYPA-AIQAYRKALKRAPSSQ-NAIKLHRALLASGNTA 753

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 690 ----MAEEWYRRAlqvARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQrdlrlalAQVLA----VMGQTKEAEKI 761
Cdd:TIGR02917 754 eavkTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN-------AVVLNnlawLYLELKDPRAL 823

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958773604 762 -----TSHIVSEEPRCLECYrllSAIYSKQEHHEKALEAIEKALQLKPKDPKV 809
Cdd:TIGR02917 824 eyaerALKLAPNIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 771-901 2.95e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 73.30  E-value: 2.95e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 771 RCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMN 850
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNP----EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958773604 851 MGGIRHIQGSYVPARVYYERALRLVPESKLLKENLAKLDRLERRLQEVRER 901
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA 128
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
782-877 6.25e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 70.97  E-value: 6.25e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 782 IYSKQEHHEKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKAfESYEAAVTLDPDQAQAWMNMGGIRHIQGSY 861
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL----GLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDY 75

                          90
                  ....*....|....*.
gi 1958773604 862 VPARVYYERALRLVPE 877
Cdd:COG3063    76 DEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 553-669 2.46e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.53  E-value: 2.46e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 553 AEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIK 632
Cdd:COG5010    37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958773604 633 NCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSP 669
Cdd:COG5010   117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
652-740 2.77e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 69.04  E-value: 2.77e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 652 GFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEwYRRALQVART-AEVLSPLGALYYNTGRHKEALEVYRE 730
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNnAEALLNLAELLLELGDYDEALAYLER 84

                          90
                  ....*....|
gi 1958773604 731 AVSLQPSQRD 740
Cdd:COG3063    85 ALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 720-876 5.92e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 70.37  E-value: 5.92e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 720 RHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKA 799
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958773604 800 LQLKPKDPKVISELfftkGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVP 876
Cdd:COG5010    81 LQLDPNNPELYYNL----ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
579-672 1.98e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.73  E-value: 1.98e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 579 LLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDvYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAV 658
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....
gi 1958773604 659 AHYQQAIQLSPSHH 672
Cdd:COG3063    80 AYLERALELDPSAL 93
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 551-802 1.26e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 69.58  E-value: 1.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 551 DMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPD-FADAYSSLASLLAEqerfKEAEDVYQA 629
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGG----EEALQYYEK 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 630 GIkncpdssdlhnnyavflvdsgfpEKAVAHYQQAIQLSPShhvAVVNLGRLHRSLGEN--SMAE--------------- 692
Cdd:cd24142    91 GI-----------------------EILEEELQALQAASAE---AEEEAEELKRKLSSAlcALAEiymtdlcdepdaeqr 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 693 -EWY-RRALQVART-AEVLSPLGALYYNTGRHKEALEVYREAVSL---------------------QPSqRDLRLALAQV 748
Cdd:cd24142   145 cEELiTKALELDPTnPEALQTLASLRISQQRPDEAKEALRRSLELwkdlkeedeeeaeedeaeeedVPS-YEFRISLAKL 223

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958773604 749 LAVMGQTKEAEKITSHIVSEEPRCLE-------CYRLLS--AIYSKQEHHEKALEAIEKALQL 802
Cdd:cd24142   224 LIELEMYEEALEVLEQLLDEDDEDVEvwyllgwAYYLLGekEQEEAAELLRDARELLEKALKL 286
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 691-804 2.90e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 65.37  E-value: 2.90e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 691 AEEWYRRALQVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEP 770
Cdd:COG5010    40 DELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP 119

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958773604 771 RCLECYRLLSAIYSKQEHHEKALEAIEKALQLKP 804
Cdd:COG5010   120 DNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
681-774 3.51e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 63.27  E-value: 3.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 681 LHRSLGENSMAEEWYRRALQVA-RTAEVLSPLGALYYNTGRHKEALEvYREAVSLQPSQRDLRLALAQVLAVMGQTKEAE 759
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|....*
gi 1958773604 760 KITSHIVSEEPRCLE 774
Cdd:COG3063    80 AYLERALELDPSALR 94
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 791-897 4.12e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 64.26  E-value: 4.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 791 KALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYER 870
Cdd:COG4235     1 EAIARLRQALAANPNDA----EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLER 76

                          90       100
                  ....*....|....*....|....*..
gi 1958773604 871 ALRLVPESKLLKENLAKLDRLERRLQE 897
Cdd:COG4235    77 ALALDPDNPEALYLLGLAAFQQGDYAE 103
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 609-840 1.15e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 66.88  E-value: 1.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 609 SLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSH-HVAVVNLGRLHRslGE 687
Cdd:cd24142     5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQLSG--GE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 688 NSMaeEWYRRALQVARtaevlsplgalyyntgRHKEALEvyREAVSLQPSQRDLRLALAQVLAVMG---QT-----KEAE 759
Cdd:cd24142    83 EAL--QYYEKGIEILE----------------EELQALQ--AASAEAEEEAEELKRKLSSALCALAeiyMTdlcdePDAE 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 760 K-----ITSHIvSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQL-KPKDPKVISElfftkgnqLREQNLLDKAFES 833
Cdd:cd24142   143 QrceelITKAL-ELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEE--------AEEDEAEEEDVPS 213


                  ....*..
gi 1958773604 834 YEAAVTL 840
Cdd:cd24142   214 YEFRISL 220
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
714-805 1.21e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 61.72  E-value: 1.21e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 714 LYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITsHIVSEEPRCLECYRLLSAIYSKQEHHEKAL 793
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDYDEAL 79

                          90
                  ....*....|..
gi 1958773604 794 EAIEKALQLKPK 805
Cdd:COG3063    80 AYLERALELDPS 91
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 553-901 1.44e-11

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 68.57  E-value: 1.44e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  553 AEAKMyyQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDfADAYSSLASLLA---------------EQ 617
Cdd:PRK11447   288 AIPEL--QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKvnrywlliqqgdaalKA 364

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  618 ERFKEAEDVYQAGIKNCPDSSdlhnnYAVF-LVDSGFPEK----AVAHYQQAIQLSPSHHVAVVNLGRLHR--------- 683
Cdd:PRK11447   365 NNLAQAERLYQQARQVDNTDS-----YAVLgLGDVAMARKdyaaAERYYQQALRMDPGNTNAVRGLANLYRqqspekala 439

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  684 ---SLG---ENSMAEewYRRALQVARtaevLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKE 757
Cdd:PRK11447   440 fiaSLSasqRRSIDD--IERSLQNDR----LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  758 AEKITSHIVSEEPRCLEcYRLLSAIY-SKQEHHEKALEAIEkALQ-------LKPKDPKVISELFFTKGNQLREQ----- 824
Cdd:PRK11447   514 ADALMRRLAQQKPNDPE-QVYAYGLYlSGSDRDRAALAHLN-TLPraqwnsnIQELAQRLQSDQVLETANRLRDSgkeae 591

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958773604  825 --NLLDKAFESYEAAVTLdPDQAQAwmnmggirhiQGSYVPARVYYERALRLVPESKLLKENLAKLDRLERRLQEVRER 901
Cdd:PRK11447   592 aeALLRQQPPSTRIDLTL-ADWAQQ----------RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
705-877 9.62e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 62.63  E-value: 9.62e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 705 AEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITShIVSEEPRCLECYRLLSAIYS 784
Cdd:COG4785     6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERID-RALALPDLAQLYYERGVAYD 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 785 KQEHHEKALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPA 864
Cdd:COG4785    85 SLGDYDLAIADFDQALELDPDLA----EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                         170
                  ....*....|...
gi 1958773604 865 RVYYERALRLVPE 877
Cdd:COG4785   161 IADLEKALELDPN 173
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 618-897 1.05e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 65.39  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 618 ERFKEAEDVYQAGikncPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRR 697
Cdd:TIGR00990 315 RAFEKALDLGKLG----EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 698 AL-QVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECY 776
Cdd:TIGR00990 391 ALkLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY 470

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 777 RLLSAIYSKQEHHEKALEAIEKALQLKPK-DPKVIS---------ELFFTKGNQLREQNLLDKAfesyeaaVTLDPDQAQ 846
Cdd:TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKEtKPMYMNvlplinkalALFQWKQDFIEAENLCEKA-------LIIDPECDI 543

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958773604 847 AWMNMGGIRHIQGSYVPARVYYERALRL--VPESKLLKENLAKLDRLERRLQE 897
Cdd:TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELarTEGELVQAISYAEATRTQIQVQE 596
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 585-824 1.09e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 65.39  E-value: 1.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 585 KTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQA 664
Cdd:TIGR00990 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 665 IQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQ-VARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRL 743
Cdd:TIGR00990 426 IDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKnFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 744 ALAQVLA---VMGQTK----EAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVISELFFT 816
Cdd:TIGR00990 506 NVLPLINkalALFQWKqdfiEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYA 585


                  ....*...
gi 1958773604 817 KGNQLREQ 824
Cdd:TIGR00990 586 EATRTQIQ 593
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 550-638 1.18e-10

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 59.62  E-value: 1.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 550 KDMAEAKMYYQRALQLHPQHN---RALFNLGNLLKSQEKTEEAIVLLKESIKYGPD---FADAYSSLASLLAEQERFKEA 623
Cdd:COG1729     7 GDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKA 86

                          90
                  ....*....|....*
gi 1958773604 624 EDVYQAGIKNCPDSS 638
Cdd:COG1729    87 RATLEELIKKYPDSE 101
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 529-736 2.05e-10

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 63.01  E-value: 2.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 529 ESLFRLYPRhasaLNNLGTLTKDMAEA--KMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLkesikygpdfada 606
Cdd:COG3071   136 EELLELLPA----LRKHKALSAEEAQAleRRAYLGLLRQAARDAEALKALWKALPRAERRDPELAAA------------- 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 607 yssLASLLAEQERFKEAEDVYQAGIKNCPDSsDLHNNYAvfLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLG 686
Cdd:COG3071   199 ---YARALIALGDHDEAERLLREALKRQWDP-RLVRLYG--RLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQ 272

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1958773604 687 ENSMAEEWYRRALQVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQP 736
Cdd:COG3071   273 LWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 535-878 2.12e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 64.23  E-value: 2.12e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 535 YPRHASALNNLGTLTKDMAEAKmyyqRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGpDFADAYSS--LAS 612
Cdd:TIGR00990 163 YSNRAACHNALGDWEKVVEDTT----AALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIID-GFRNEQSAqaVER 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 613 LLAEQERFKeAEDVYQAGIKNCPDSSDLHNNYAVFLvdsgfPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSlgenSMAE 692
Cdd:TIGR00990 238 LLKKFAESK-AKEILETKPENLPSVTFVGNYLQSFR-----PKPRPAGLEDSNELDEETGNGQLQLGLKSPE----SKAD 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 693 EWYRRALQVARTAEVLSPLG---ALYYN--------TGRHKEALEVYREAVSLqpsqrdlrlalaqvlavmgqtkeaeki 761
Cdd:TIGR00990 308 ESYEEAARAFEKALDLGKLGekeAIALNlrgtfkclKGKHLEALADLSKSIEL--------------------------- 360

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 762 tshivseEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVI---SELFFTKGNqlreqnlLDKAFESYEAAV 838
Cdd:TIGR00990 361 -------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYyhrAQLHFIKGE-------FAQAGKDYQKSI 426

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1958773604 839 TLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPES 878
Cdd:TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 821-900 2.26e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.97  E-value: 2.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 821 LREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLKENLAKLDRLERRLQEVRE 900
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
533-602 7.54e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 56.72  E-value: 7.54e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958773604 533 RLYPRHASALNNLGTL---TKDMAEAKMyYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPD 602
Cdd:COG3063    20 ELDPDNADALNNLGLLlleQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 533-616 1.25e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.94  E-value: 1.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 533 RLYPRHASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYsS 609
Cdd:COG4235    45 RLDPDNADALLDLAEAllaAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR-L 123


                  ....*..
gi 1958773604 610 LASLLAE 616
Cdd:COG4235   124 LEASIAE 130
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 648-877 1.51e-09

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 60.31  E-value: 1.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 648 LVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGEnsmaeewYRRALQVARTAEVLSPLGALYYNTGRHKEALEV 727
Cdd:COG3071    95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGD-------WEELLELLPALRKHKALSAEEAQALERRAYLGL 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 728 YREAV-----------SLQPSQR---DLRLALAQVLAVMGQTKEAEKITSHIVSEE--PRCLECYRLLsaiysKQEHHEK 791
Cdd:COG3071   168 LRQAArdaealkalwkALPRAERrdpELAAAYARALIALGDHDEAERLLREALKRQwdPRLVRLYGRL-----QGGDPAK 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 792 ALEAIEKALQLKPKDPkvisELFFTKGNQLREQNLLDKAFESYEAAVTLDPDqAQAWMNMGGIRHIQGSYVPARVYYERA 871
Cdd:COG3071   243 QLKRAEKWLKKHPNDP----DLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKA 317


                  ....*.
gi 1958773604 872 LRLVPE 877
Cdd:COG3071   318 LALALG 323
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
821-900 1.64e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.56  E-value: 1.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 821 LREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVyYERALRLVPESKLLKENLAKLDRLERRLQEVRE 900
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
pgaA PRK10049
outer membrane protein PgaA; Provisional
 694-826 1.98e-09

outer membrane protein PgaA; Provisional


Pssm-ID: 236644 [Multi-domain]  Cd Length: 765  Bit Score: 61.27  E-value: 1.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 694 WYRRALQVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCL 773
Cdd:PRK10049   38 YNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKA 117

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958773604 774 EcYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVISELFFT-KGNQLREQNL 826
Cdd:PRK10049  118 N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAlRNNRLSAPAL 170
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 594-856 5.48e-09

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 59.45  E-value: 5.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 594 KESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHV 673
Cdd:NF033758   76 KAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKPTLRQASENLAVMAQNAGDVAGAVALYQDVLKRYPDDAS 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 674 AVVNLGRLHRSLGENSMAEEWYRRALQvaRTAEVLSPLGAL---YYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLA 750
Cdd:NF033758  156 SRARLAEIYRQTGDHDKAMELSRAALM--RDPQSTTALKVMmrsYLDRKQLAMAKLVALRAVKIDQNDPELHHTVGLILL 233

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 751 VMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVISELfftkGNQLREQNLLDKA 830
Cdd:NF033758  234 QEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLRRILQADGKNAAAHLNL----GVAYKGQGQYDKA 309

                         250       260
                  ....*....|....*....|....*.
gi 1958773604 831 FESYEAAVTLDPDQAQAWMNMGGIRH 856
Cdd:NF033758  310 MQEYDEAEKLDPELAAIYLNRAIILH 335
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 554-802 2.03e-08

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 56.94  E-value: 2.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 554 EAKMYYQRALQLHP--QHNR---ALFNLGNLLKSQEKTEEAIVLLKESIK------YGPDFADAYSSLASLLAEQERFKE 622
Cdd:pfam17874  19 RALELAEQALALLPedDLLArglATFVLGEAYLCLGDLDAALQAMREAEAlarradSPHVTLWALLQQGEILRAQGRLHQ 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 623 AEDVYQAGIKNCPDSS--------DLHNNYAVFLVDSGFPEKAVAHYQQAIQL----SPSHHV-AVVNLGRLHRSLGENS 689
Cdd:pfam17874  99 ALETYQQALQLARDHGlqhlplhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLgrqwEPDAAVdAYVLLARIALAQGELE 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 690 MAEEWYRRALQVARTAEVLSPLGA-------LYYNTGRHKEALEVYREAVSLQPS------QRDLRLaLAQVLAVMGQTK 756
Cdd:pfam17874 179 EALTLLRRAELLARQSFFHVDWLAnaervrvRLWLARGDLRAAVRWLRAAEPPSDadnhflERELRN-LARVLLALGRFD 257

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1958773604 757 EAEKITSHIVS---EEPRCLECYR---LLSAIYSKQEHHEKALEAIEKALQL 802
Cdd:pfam17874 258 DALSLLERLQNlaeQLGRVRSLIEnliLQALALLALGRPDEALQALLDALSL 309
TPR_19 pfam14559
Tetratricopeptide repeat;
719-782 2.26e-08

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 51.43  E-value: 2.26e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958773604 719 GRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAI 782
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 497-876 3.61e-08

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 57.40  E-value: 3.61e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  497 RCGATSLMASTVLLLLLFSWKTVKQNEIWL---------------SRESLFRLY---PRHASALN---NLGTLTKDMAEA 555
Cdd:PRK11447     2 RKFTLSLLTLSLGLALLPLAQAAPTAQQQLleqvrlgeathredlVRQSLYRLElidPNNPDVIAarfRLLLRQGDSDGA 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  556 KMYYQRALQLHP-----QHNRALFNL-----------GNLLKSQEKTEEAIVLLKESIKYGP---DFADAYSSLASLLAE 616
Cdd:PRK11447    82 QKLLDRLSQLAPdsnayRSSRTTMLLstpegrqalqqARLLATTGRTEEALASYDKLFNGAPpelDLAVEYWRLVAKLPA 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  617 QErfKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQaiqlspshhVAVVNLGRlhrslgeNSMAEEWYR 696
Cdd:PRK11447   162 QR--PEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQ---------MAKSPAGR-------DAAAQLWYG 223

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  697 ralQVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDL-------RL-ALAQVLAvmGQTKEAEKITSHIVSE 768
Cdd:PRK11447   224 ---QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLadpafraRAqGLAAVDS--GQGGKAIPELQQAVRA 298

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  769 EPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKvISE-----------LFFTKGNQLREQNLLDKAFESYEAA 837
Cdd:PRK11447   299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKwesllkvnrywLLIQQGDAALKANNLAQAERLYQQA 377

                          410       420       430
                   ....*....|....*....|....*....|....*....
gi 1958773604  838 VTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVP 876
Cdd:PRK11447   378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
744-878 5.15e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.54  E-value: 5.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 744 ALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKVIS-----ELFFTKG 818
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAlpdlaQLYYERG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 819 NQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPES 878
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 548-760 6.47e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 56.53  E-value: 6.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 548 LTKDMAEAKMYYQRAlQLHpqhnralFNLGNLLKSQEKTEEAIVLlkesikyGPDFADAYSSLASLLAEQERFKEAEDVY 627
Cdd:TIGR00990 392 LKLNSEDPDIYYHRA-QLH-------FIKGEFAQAGKDYQKSIDL-------DPDFIFSHIQLGVTQYKEGSIASSMATF 456

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 628 QAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLhrsLGENSMAEEW---YRRALQVART 704
Cdd:TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL---INKALALFQWkqdFIEAENLCEK 533

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958773604 705 AEVLSP--------LGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEK 760
Cdd:TIGR00990 534 ALIIDPecdiavatMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQED 597
TPR_12 pfam13424
Tetratricopeptide repeat;
676-737 7.24e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.46  E-value: 7.24e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958773604 676 VNLGRLHRSLGENSMAEEWYRRALQVAR---------TAEVLSPLGALYYNTGRHKEALEVYREAVSLQPS 737
Cdd:pfam13424   7 NNLAAVLRRLGRYDEALELLEKALEIARrllgpdhplTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 560-761 9.65e-08

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 54.92  E-value: 9.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 560 QRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLAsLLAEQERFKEA---EDVYQAGIKNCPD 636
Cdd:COG3071   109 EALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALE-RRAYLGLLRQAardAEALKALWKALPR 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 637 S----SDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVnLGRLHRSLGEN--SMAEEWYRRAlqvARTAEVLSP 710
Cdd:COG3071   188 AerrdPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRL-YGRLQGGDPAKqlKRAEKWLKKH---PNDPDLLLA 263

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958773604 711 LGALYYNTGRHKEALEVYREAVSLQPSQRDLrLALAQVLAVMGQTKEAEKI 761
Cdd:COG3071   264 LGRLCLRNQLWGKAREYLEAALALRPSAEAY-AELARLLEQLGDPEEAAEH 313
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 785-891 1.31e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 50.76  E-value: 1.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 785 KQEHHEKALEAIEKALQLKPKDPKVISELFFtKGNQLREQNLLDKAFESYEAAVTLDPD---QAQAWMNMGGIRHIQGSY 861
Cdd:COG1729     5 KAGDYDEAIAAFKAFLKRYPNSPLAPDALYW-LGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDY 83

                          90       100       110
                  ....*....|....*....|....*....|
gi 1958773604 862 VPARVYYERALRLVPESKLLKENLAKLDRL 891
Cdd:COG1729    84 DKARATLEELIKKYPDSEAAKEARARLARL 113
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 829-900 5.10e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 5.10e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958773604 829 KAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLKENLAKLDRLERRLQEVRE 900
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEE 72
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
695-873 6.98e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.07  E-value: 6.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 695 YRRALQVARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPsqrdlrlALAQVlavmgqtkeaekitshivseeprcle 774
Cdd:COG4785    63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP-------DLAEA-------------------------- 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 775 cYRLLSAIYSKQEHHEKALEAIEKALQLKPKDPKViselFFTKGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGI 854
Cdd:COG4785   110 -YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA----YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA 184

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1958773604 855 RH--------------------IQGSYVPARVYYERALR 873
Cdd:COG4785   185 ERkldpekalallledwataylLQGDTEEARELFKLALA 223
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 536-669 9.32e-07

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 52.78  E-value: 9.32e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  536 PRHASALNNLGTLT---KDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQ--EKTEEAIVLLKESIKygPDFADAYSSL 610
Cdd:PRK11447   382 NTDSYAVLGLGDVAmarKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQspEKALAFIASLSASQR--RSIDDIERSL 459

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958773604  611 --------ASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSP 669
Cdd:PRK11447   460 qndrlaqqAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526
TPR_15 pfam13429
Tetratricopeptide repeat;
576-807 9.38e-07

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 51.59  E-value: 9.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 576 LGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLA-----EQERFKEAEDVYQAGIKNCPDSSDLhnnyaVFLVD 650
Cdd:pfam13429  14 LATLLYGQGDPRKALAALKEGAQTAPASDTEFWRTLADLAwalqqDDDARRAYRQLLASGKARADDYERL-----ILLLY 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 651 SGFPEKAVA-------------HYQQAIQLSPSHHvAVVNLGRLHRSLGENSMAEewyrralqvaRTAEVLSPLGALYYN 717
Cdd:pfam13429  89 DARPKDAARlselgwrrfrsprHLYSALYLYERAG-DYDRLARLLASLEELPAAE----------QSPAFWLARAEYYRQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 718 TGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQEHHEKALEAIE 797
Cdd:pfam13429 158 TGEPDAALRDYRRALALAPASTELRAALLWFLIDLGRRAELRPALAAWRARAETDADLWGPLAAAYLRLGRPRKALPYLR 237

                         250
                  ....*....|
gi 1958773604 798 KALQLKPKDP 807
Cdd:pfam13429 238 KQAASNRNDP 247
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 529-613 1.64e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.68  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 529 ESLFRLYPRH---ASALNNLGTL---TKDMAEAKMYYQRALQLHPQHNR---ALFNLGNLLKSQEKTEEAIVLLKESIKY 599
Cdd:COG1729    17 KAFLKRYPNSplaPDALYWLGEAyyaLGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKK 96

                          90
                  ....*....|....
gi 1958773604 600 GPDFADAYSSLASL 613
Cdd:COG1729    97 YPDSEAAKEARARL 110
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 614-700 3.01e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.91  E-value: 3.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 614 LAEQERFKEAEDVYQAGIKNCPDSS---DLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHV---AVVNLGRLHRSLGE 687
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82

                          90
                  ....*....|...
gi 1958773604 688 NSMAEEWYRRALQ 700
Cdd:COG1729    83 YDKARATLEELIK 95
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 571-683 3.10e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.91  E-value: 3.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 571 RALFNLGNLlksqektEEAIVLLKESIKYGPD---FADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSS---DLHNNY 644
Cdd:COG1729     1 KALLKAGDY-------DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKL 73

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1958773604 645 AVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHR 683
Cdd:COG1729    74 GLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLAR 112
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 715-853 3.93e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 48.13  E-value: 3.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 715 YY-------NTGRHKEALEVYREAVSLQPSQRDlRlalAQVLAVMGqtkeaekitshivseeprclecyrllsAIYSKQE 787
Cdd:PRK02603   38 YYrdgmsaqADGEYAEALENYEEALKLEEDPND-R---SYILYNMG---------------------------IIYASNG 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958773604 788 HHEKALEAIEKALQLKPKDP---KVISELFFTKGNQLREQ-------NLLDKAFESYEAAVTLDPD---QAQAWMNMGG 853
Cdd:PRK02603   87 EHDKALEYYHQALELNPKQPsalNNIAVIYHKRGEKAEEAgdqdeaeALFDKAAEYWKQAIRLAPNnyiEAQNWLKTTG 165
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 814-902 4.15e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 4.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 814 FFTKGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPESKLLKENLAK------ 887
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQdylkag 90

                          90
                  ....*....|....*.
gi 1958773604 888 -LDRLERRLQEVRERD 902
Cdd:COG2956    91 lLDRAEELLEKLLELD 106
TPR_12 pfam13424
Tetratricopeptide repeat;
539-598 4.78e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 4.78e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958773604 539 ASALNNLGTL---TKDMAEAKMYYQRALQL--------HPQHNRALFNLGNLLKSQEKTEEAIVLLKESIK 598
Cdd:pfam13424   3 ATALNNLAAVlrrLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
TPR_12 pfam13424
Tetratricopeptide repeat;
704-805 8.19e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.69  E-value: 8.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 704 TAEVLSPLGALYYNTGRHKEALEVYREAvslqpsqrdlrlalaqvLAVMGQTKEAEKitshivseePRCLECYRLLSAIY 783
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKA-----------------LEIARRLLGPDH---------PLTATTLLNLGRLY 55

                          90       100
                  ....*....|....*....|..
gi 1958773604 784 SKQEHHEKALEAIEKALQLKPK 805
Cdd:pfam13424  56 LELGRYEEALELLERALALAEK 77
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
602-733 8.25e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 48.34  E-value: 8.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 602 DFADAYSS---LASLLAEQERFKEAEDVYQAGIK-NCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSH-----H 672
Cdd:COG4700    84 EFADTVQNrvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFkssdaH 163

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958773604 673 VAvvnLGRLHRSLGENSMAEEWYRRALQVARTAEVLSPLGALYYNTGRHKEALEVYREAVS 733
Cdd:COG4700   164 LL---YARALEALGDLEAAEAELEALARRYSGPEARYRYAKFLARQGRTAEAKELLEEILD 221
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 686-770 1.00e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.37  E-value: 1.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 686 GENSMAEEWYRRALQV----ARTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQR---DLRLALAQVLAVMGQTKEA 758
Cdd:COG1729     7 GDYDEAIAAFKAFLKRypnsPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKA 86

                          90
                  ....*....|..
gi 1958773604 759 EKITSHIVSEEP 770
Cdd:COG1729    87 RATLEELIKKYP 98
TPR COG0790
TPR repeat [General function prediction only];
538-702 1.20e-05

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 47.62  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 538 HASALNNLGTL-------TKDMAEAKMYYQR-ALQLHPqhnRALFNLGNLLKS----QEKTEEAIVLLKESIKYGpdFAD 605
Cdd:COG0790    62 GAEAQYNLGLMyaegrgvPKDYEKALEWFEKaAEQGDA---EAQYNLGLMYEEglgvPQDYAKALEWYEKAAEQG--DAD 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 606 AYSSLASLLAE----QERFKEAEDVYQ-AGIKNCPDSsdlHNNYAVFLVD-SGFP---EKAVAHYQQAIQLspSHHVAVV 676
Cdd:COG0790   137 AQYNLGLLYLNgegvPKDPAKAAEWYRkAAEQGDADA---QYNLGVLYENgRGVPkdpAKALEWYRKAAEQ--GDADAQY 211

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1958773604 677 NLGRLHRSlGE-----NSMAEEWYRRALQVA 702
Cdd:COG0790   212 NLGRLYLN-GEgvekdLEKALRWLRKAAEQA 241
TPR_19 pfam14559
Tetratricopeptide repeat;
550-613 1.56e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 43.34  E-value: 1.56e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958773604 550 KDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASL 613
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR_19 pfam14559
Tetratricopeptide repeat;
583-645 2.05e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 42.96  E-value: 2.05e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958773604 583 QEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYA 645
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 564-766 2.67e-05

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 47.99  E-value: 2.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 564 QLHPQHNRALFNLGNLLKSQEKTEEAIVL-------LKESIKYGPDFAD---AYSSLASLLAEQERFKEA----EDVYQA 629
Cdd:NF040586  428 PDDRQTLRLRFHLANALRSLGRYEEARELdedtlerQRRVLGLGEDHPHtlmTAGGLGADLRALGRFREAleldEETLER 507

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 630 ----GIKNCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQ-----LSPSHH---VAVVNLGRLHRSLGENSMA----EE 693
Cdd:NF040586  508 hrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRrrrrvLGPDHPrtlLSANNLARDLRELGRYAEAldllEE 587

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 694 WYRRALQVARTAEVLSPLGAL------YYNTGRHKEALE----VYREAVSLQ----PSQRDLRLALAQVLAVMGQTKEAE 759
Cdd:NF040586  588 ALERYREVLGGPDHPDTLRAAkslavaLRRAGRLEEALElaedTYERYRRRFgpdhPDTLAAALSLANDLRALGDADEAR 667


                  ....*..
gi 1958773604 760 KITSHIV 766
Cdd:NF040586  668 ELAREVL 674
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 529-629 2.76e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 2.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 529 ESLFRLYPRHASALNNLG--TLTKDMAEAKMYYQRALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADA 606
Cdd:TIGR02917 794 QTVVKKAPDNAVVLNNLAwlYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873

                          90       100
                  ....*....|....*....|...
gi 1958773604 607 YSSLASLLAEQERFKEAEDVYQA 629
Cdd:TIGR02917 874 RYHLALALLATGRKAEARKELDK 896
TPR_11 pfam13414
TPR repeat;
818-859 2.97e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.69  E-value: 2.97e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1958773604 818 GNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQG 859
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
577-617 3.58e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 41.69  E-value: 3.58e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1958773604 577 GNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQ 617
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 620-728 5.38e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 44.66  E-value: 5.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 620 FKEAEDVYQAGIK---NCPDSSDLHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSM------ 690
Cdd:PRK02603   51 YAEALENYEEALKleeDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEeagdqd 130

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1958773604 691 -AEEWYRRALQVARTAEVLSPLGAL-----YYNTGRHKeaLEVY 728
Cdd:PRK02603  131 eAEALFDKAAEYWKQAIRLAPNNYIeaqnwLKTTGRSN--IDVY 172
TPR_12 pfam13424
Tetratricopeptide repeat;
602-703 5.59e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 5.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 602 DFADAYSSLASLLAEQERFKEAEDVYqagikncpdssdlhnnyavflvdsgfpEKAVAHYQQAiqLSPSHHVAVV---NL 678
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELL---------------------------EKALEIARRL--LGPDHPLTATtllNL 51

                          90       100
                  ....*....|....*....|....*
gi 1958773604 679 GRLHRSLGENSMAEEWYRRALQVAR 703
Cdd:pfam13424  52 GRLYLELGRYEEALELLERALALAE 76
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 574-638 6.55e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.55  E-value: 6.55e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958773604 574 FNLGNLLKSQEKTEEAIVLLKESIKYG---PDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSS 638
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 791-887 8.14e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 44.28  E-value: 8.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 791 KALEAIEKALQLKpKDPKVISELFFTKGNQLREQNLLDKAFESYEAAVTLDPDQAQAWMNMGGIRHIQGS---------- 860
Cdd:PRK02603   53 EALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEkaeeagdqde 131

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1958773604 861 ----YVPARVYYERALRLVPESKLLKENLAK 887
Cdd:PRK02603  132 aealFDKAAEYWKQAIRLAPNNYIEAQNWLK 162
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 528-636 1.52e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 44.90  E-value: 1.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 528 RESLFRLYPRHASAlnNLGTLTKdMAEAkmyyqrALQLHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDfADAY 607
Cdd:COG3071   225 DPRLVRLYGRLQGG--DPAKQLK-RAEK------WLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAY 294

                          90       100
                  ....*....|....*....|....*....
gi 1958773604 608 SSLASLLAEQERFKEAEDVYQAGIKNCPD 636
Cdd:COG3071   295 AELARLLEQLGDPEEAAEHYRKALALALG 323
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 654-760 3.07e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 44.03  E-value: 3.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 654 PEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQ--VARTAEVLSPLGALYYNTGRHKEALEVYREA 731
Cdd:PRK11788  196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEqdPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275

                          90       100
                  ....*....|....*....|....*....
gi 1958773604 732 VSLQPSQrDLRLALAQVLAVMGQTKEAEK 760
Cdd:PRK11788  276 LEEYPGA-DLLLALAQLLEEQEGPEAAQA 303
TPR_11 pfam13414
TPR repeat;
712-753 3.50e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.99  E-value: 3.50e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1958773604 712 GALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMG 753
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 715-809 3.84e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 3.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 715 YYNTGRHKEALEVYREAVSLQPS---QRDLRLALAQVLAVMGQTKEAEKITSHIVSEEP---RCLECYRLLSAIYSKQEH 788
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGD 82

                          90       100
                  ....*....|....*....|.
gi 1958773604 789 HEKALEAIEKALQLKPKDPKV 809
Cdd:COG1729    83 YDKARATLEELIKKYPDSEAA 103
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 786-901 4.73e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.39  E-value: 4.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 786 QEHHEKALEAIEKALQLKPKDPKVIsELFftkGNQLREQNLLDKAFESYEAAVTLDPDQ-AQAWMNMGGIrhIQGSyvPA 864
Cdd:cd24142    13 QGNFELALKFLQRALELEPNNVEAL-ELL---GEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGGE--EA 84

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958773604 865 RVYYERALRLVpeSKLLKENLAKLDRLERRLQEVRER 901
Cdd:cd24142    85 LQYYEKGIEIL--EEELQALQAASAEAEEEAEELKRK 119
HemYx COG3898
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ...
 586-782 4.95e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];


Pssm-ID: 443105 [Multi-domain]  Cd Length: 468  Bit Score: 43.73  E-value: 4.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 586 TEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNY-AVFL------VDSGFPEKAV 658
Cdd:COG3898   168 TEAALALAEEALALAPKLPWAQDALLELQAAAGDWDGALATLDAALKAGLLDKDVARRRrAVLLtarareLEEGDPDEAR 247

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 659 AHYQQAIQLSPSHHVAVVNLGRLHRSLGENsmaeewyRRALQVARTAEVLSPlgalyyntgrHKEALEVYREA------- 731
Cdd:COG3898   248 ELAIEALKLAPDLVPAAVLAARLLIAQGKL-------RKAAKVLEKAWRAQP----------HPDLAAAYAELrpgdsal 310

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 732 ---------VSLQPSQRDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECyRLLSAI 782
Cdd:COG3898   311 drlkraetlAALNPDHPESRLALAEAALAAGDFGEARRALGPLLEERPTARVC-LLMAEI 369
TPR_14 pfam13428
Tetratricopeptide repeat;
711-748 5.35e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 38.56  E-value: 5.35e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1958773604 711 LGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQV 748
Cdd:pfam13428   7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 551-843 6.41e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.98  E-value: 6.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 551 DMAEAKMYYQRALQLHPQHNRA-LFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDVYQA 629
Cdd:COG3071    65 DYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPA 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 630 GIKNcpdssdlhnnyavflvdSGFPEKAVAHYQQAiqlspshhvavVNLGRLHRSLGENSMAEEWYR---RALQvaRTAE 706
Cdd:COG3071   145 LRKH-----------------KALSAEEAQALERR-----------AYLGLLRQAARDAEALKALWKalpRAER--RDPE 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 707 VLSPLGALYYNTGRHKEALEVYREAVSLQPsqrDLRLALAQVLAVMGQTKEAEKITSHIVSEEPRCLECYRLLSAIYSKQ 786
Cdd:COG3071   195 LAAAYARALIALGDHDEAERLLREALKRQW---DPRLVRLYGRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRN 271

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958773604 787 EHHEKALEAIEKALQLKPkDPKVISELfftkGNQLREQNLLDKAFESYEAAVTLDPD 843
Cdd:COG3071   272 QLWGKAREYLEAALALRP-SAEAYAEL----ARLLEQLGDPEEAAEHYRKALALALG 323
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 535-760 9.07e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.98  E-value: 9.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 535 YPRHASALNNLG---TLTKDMAEAKMYYQRALQLH-----PQHNRALFNLGNL---LKSQEKTEEAIVLLKESIKY---- 599
Cdd:NF040586  516 HPRTLRAANNLAvslRLLGDYREALELDREVLRRRrrvlgPDHPRTLLSANNLardLRELGRYAEALDLLEEALERyrev 595

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 600 --GPDFAD---AYSSLASLLAEQERFKEA----EDVYQA-----GIKNcPDSSDLHNNYAVFLVDSGFPEKA-------V 658
Cdd:NF040586  596 lgGPDHPDtlrAAKSLAVALRRAGRLEEAlelaEDTYERyrrrfGPDH-PDTLAAALSLANDLRALGDADEArelarevL 674

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 659 AHYQQAIQLS-PSHHVAVVNLGRLHRSLGENSMAEEWYRRALqvARTAEVLSP-----------LGALYYNTGRHKEAL- 725
Cdd:NF040586  675 DRYRRVLGEDhPFTLACRNNLAVLLRALGDPEEARELAEAAL--EGLRERLGPdhpytlaaavnLANDLAALGDLDAALg 752

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1958773604 726 -------EVYREAVSLQPSQRDLRLA----LAQVLAVMGQTKEAEK 760
Cdd:NF040586  753 eealerlRRLLGEDLRAGPDHPDTLAcaanLALDLRATGRTEEAEE 798
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 691-758 9.32e-04

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 40.36  E-value: 9.32e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958773604  691 AEEW---YRRALQVARtAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEA 758
Cdd:smart01043  45 DEDWaeaERERLRELR-LEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEA 114
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 774-805 1.06e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.06e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958773604 774 ECYRLLSAIYSKQEHHEKALEAIEKALQLKPK 805
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 711-736 1.12e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.12e-03
                          10        20
                  ....*....|....*....|....*.
gi 1958773604 711 LGALYYNTGRHKEALEVYREAVSLQP 736
Cdd:pfam07719   7 LGLAYYKLGDYEEALEAYEKALELDP 32
TPR_1 pfam00515
Tetratricopeptide repeat;
705-737 1.19e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.19e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1958773604 705 AEVLSPLGALYYNTGRHKEALEVYREAVSLQPS 737
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 815-878 1.36e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.09  E-value: 1.36e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958773604 815 FTKGNQLREQNLLDKAFESYEAAVTLD---PDQAQAWMNMGGIRHIQGSYVPARVYYERALRLVPES 878
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
ycf3 CHL00033
photosystem I assembly protein Ycf3
 782-853 1.51e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 40.38  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 782 IYSKQEHHEKALEAIEKALQLKPKDPK------VI----SELFFTKGNQLREQNLLDKAFESYEAAVTLDPD---QAQAW 848
Cdd:CHL00033   81 IHTSNGEHTKALEYYFQALERNPFLPQalnnmaVIchyrGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGnyiEAQNW 160


                  ....*
gi 1958773604 849 MNMGG 853
Cdd:CHL00033  161 LKITG 165
TPR_1 pfam00515
Tetratricopeptide repeat;
774-806 1.72e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 1.72e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1958773604 774 ECYRLLSAIYSKQEHHEKALEAIEKALQLKPKD 806
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 604-745 2.12e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 40.61  E-value: 2.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 604 ADAYSSLASLLAEQERfKEAEDVYQAGIKNCPDSSdlhnnYAVF--------LVDSGFPEKAVAHYQQAIQLSPS---HH 672
Cdd:COG2976    54 SALYEQLLEALAAGDA-AAAAAAAEKLIDDYGGTA-----YAALaalllakaAVDAGDLDKAAAQLQWVLDNAKDpalKA 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 673 VAVVNLGRLHrslgensMAEEWYRRALQV----------ARTAEVLsplGALYYNTGRHKEALEVYREAVSLQPSQRDLR 742
Cdd:COG2976   128 LARLRLARVL-------LAQKKYDEALATldavkpeafaALYAELR---GDILLAQGDKAEARAAYQKALAALPEDAPLR 197


                  ...
gi 1958773604 743 LAL 745
Cdd:COG2976   198 QLL 200
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 648-706 2.19e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.32  E-value: 2.19e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958773604 648 LVDSGFPEKAVAHYQQAI---QLSPSHHVAVVNLGRLHRSLGENSMAEEWYRRALQVARTAE 706
Cdd:pfam13432   7 ALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 774-806 2.19e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 2.19e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1958773604  774 ECYRLLSAIYSKQEHHEKALEAIEKALQLKPKD 806
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 711-737 3.91e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 3.91e-03
                           10        20
                   ....*....|....*....|....*..
gi 1958773604  711 LGALYYNTGRHKEALEVYREAVSLQPS 737
Cdd:smart00028   7 LGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
571-603 3.94e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 3.94e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1958773604 571 RALFNLGNLLKSQEKTEEAIVLLKESIKYGPDF 603
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
550-698 4.83e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.87  E-value: 4.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 550 KDMAEAKMYYQRALQ-LHPQHNRALFNLGNLLKSQEKTEEAIVLLKESIKYGPDFADAYSSL--ASLLAEQERFKEAEDV 626
Cdd:COG4700   103 GRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSDAHLlyARALEALGDLEAAEAE 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604 627 YQAGIKncpdssdLHNN------YAVFLVDSGFPEKAVAHYQQAI---QLSPSHHvavvnlGRLHRslgensmaeEWYRR 697
Cdd:COG4700   183 LEALAR-------RYSGpearyrYAKFLARQGRTAEAKELLEEILdeaKHMPKHY------RRLNR---------EWIRE 240


                  .
gi 1958773604 698 A 698
Cdd:COG4700   241 A 241
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 539-569 5.36e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 5.36e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1958773604  539 ASALNNLGTL---TKDMAEAKMYYQRALQLHPQH 569
Cdd:smart00028   1 AEALYNLGNAylkLGDYDEALEYYEKALELDPNN 34
TPR_7 pfam13176
Tetratricopeptide repeat;
677-706 5.55e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 35.21  E-value: 5.55e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1958773604 677 NLGRLHRSLGENSMAEEWYRRALQVARTAE 706
Cdd:pfam13176   4 NLGRIYRKLGDYDEAISLYEQALALAKDPY 33
COG3899 COG3899
Predicted ATPase [General function prediction only];
528-750 6.21e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 40.61  E-value: 6.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  528 RESLFRLYPRHASALNNLGtltkDMAEAKMYYQRALQLHPQHNRALFNLGNLlksqekTEEAIVLLKESIKYGPDFADAY 607
Cdd:COG3899    741 EEYRLALLLELAEALYLAG----RFEEAEALLERALAARALAALAALRHGNP------PASARAYANLGLLLLGDYEEAY 810

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  608 SSLASLLAEQERFKEAEDVYQAgikncpdssdlHNNYAVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRSLGE 687
Cdd:COG3899    811 EFGELALALAERLGDRRLEARA-----------LFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAA 879

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958773604  688 NSMAEEWYRRALQVARTAEVLSPLGALYyntgRHKEALEVYREAVSLQPSQRDLRLALAQVLA 750
Cdd:COG3899    880 AAAAAALAAAAAAAARLLAAAAAALAAA----AAAAALAAAELARLAAAAAAAAALALAAAAA 938
TPR_1 pfam00515
Tetratricopeptide repeat;
539-569 6.26e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 6.26e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1958773604 539 ASALNNLGTL---TKDMAEAKMYYQRALQLHPQH 569
Cdd:pfam00515   1 AKALYNLGNAyfkLGKYDEALEYYEKALELNPNN 34
TPR_8 pfam13181
Tetratricopeptide repeat;
711-737 7.83e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.68  E-value: 7.83e-03
                          10        20
                  ....*....|....*....|....*..
gi 1958773604 711 LGALYYNTGRHKEALEVYREAVSLQPS 737
Cdd:pfam13181   7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
COG3899 COG3899
Predicted ATPase [General function prediction only];
536-802 8.94e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 39.84  E-value: 8.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  536 PRHASALNNLG-TLTKDMAEAKMYYQRALQLHPQHN------RALFNLGNLLKSQEKTEEAIVLLKESIKYG---PDFAD 605
Cdd:COG3899    789 PASARAYANLGlLLLGDYEEAYEFGELALALAERLGdrrleaRALFNLGFILHWLGPLREALELLREALEAGletGDAAL 868

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  606 AYSSLASLLAEQERFKEAEDVYQAGIKNCPDSSDLHNNYA-VFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLHRS 684
Cdd:COG3899    869 ALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAaAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAA 948

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773604  685 LGENSMAEEWYRRALQVARTAEVLspLGALYYNTGRHKEALEVYREAVSLQPSQRDLRLALAQVLAVMGQTKEAEKITSH 764
Cdd:COG3899    949 AAAAALAAALALAAAAAAAAAAAL--AAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAA 1026

                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1958773604  765 IVSEEPRCLECYRLLSAIYSKQEHHEKALEAIEKALQL 802
Cdd:COG3899   1027 LAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAA 1064
TPR_17 pfam13431
Tetratricopeptide repeat;
558-590 9.13e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 34.83  E-value: 9.13e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1958773604 558 YYQRALQLHPQHNRALFNLGNLLKSQEKTEEAI 590
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
TPR_1 pfam00515
Tetratricopeptide repeat;
845-877 9.75e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 9.75e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1958773604 845 AQAWMNMGGIRHIQGSYVPARVYYERALRLVPE 877
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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