NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958775104|ref|XP_038965346|]
View 

anion exchange transporter isoform X1 [Rattus norvegicus]

Protein Classification

SLC26A/SulP family transporter( domain architecture ID 1000281)

SLC26A/SulP family transporter may be an inorganic anion uptake transporter or an anion:anion exchange transporter, similar to human anion exchange transporter that acts as a sodium-independent DIDS-sensitive anion exchanger mediating bicarbonate, chloride, sulfate and oxalate transport

Gene Ontology:  GO:0008509|GO:0015698
PubMed:  12759755|23506885
SCOP:  4006096
TCDB:  2.A.53

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PRK11660 super family cl46980
putative transporter; Provisional
33-673 1.76e-92

putative transporter; Provisional


The actual alignment was detected with superfamily member TIGR00815:

Pssm-ID: 481320 [Multi-domain]  Cd Length: 552  Bit Score: 297.71  E-value: 1.76e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  33 PILEWAPQYNLKEnLLPDTVSGVLLAVQQVTQGLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISA 112
Cdd:TIGR00815   1 PVLRWLRKYRLKK-FKGDLMAGLTVGILLIPQAIAYAKLAGLPPIYGLYTSFVPPIIYALFGSSRHIAIGPTASVSLLLG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 113 NAVERLvpqsnrnlttqsnssvlGLSEFELQRIGVAAAVSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVT 192
Cdd:TIGR00815  80 SLVQRE-----------------GLQGLFDDYIRLAFTATLLAGIFQVIMGLLRLGFLIEYLSHAVLVGFTAGAAITIGL 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 193 SQVKYLLGIKMPYISGPLGFFY-IYAYVFENiksvQLEALLLSLLSIVVLVLVKELNEQFKRKIKVVLPVDLVLIIAASF 271
Cdd:TIGR00815 143 SQLKGLLGLSIFVKTDILGVVIsTWASLHQN----NWCTLVIGLLFLLFLLATKELGKRNKKLLWAPAPAPLLVVVLATL 218
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 272 ACYCTNMENtYGLEVVGRIPKGIP--PPRAPPMNILSAVLTEAFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGL 349
Cdd:TIGR00815 219 IVTIGLHDS-QGVSIVGHIPQGLSffPPITFTWQHLPTLAPDAIAIAIVGLTESILTARVFAAMTGYEIDANKELVALGI 297
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 350 SNVIPSFLFCIPSAAAMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGmLIQFRDLKK 429
Cdd:TIGR00815 298 ANIVGSFFSCYPATGSLSRTAVNYKAGCKTQLSAIVMAIVVLLVLLVLAPLFYYIPLAALAAIIISAAVG-LIDIRELYL 376
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 430 YWNVDKIDWGIWISTYIFTICFAANVGLLFGVVCTIAIVLGRFPRAKTLSITDMKEmelkvkTETYDNTENWPpskstNV 509
Cdd:TIGR00815 377 LWKADKMDFVVWLGTFLGVVFTSIEIGLLVGVSLSAFFFILRVARPRAAVLGRIPG------TEDYENIEQYP-----KA 445
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 510 KVFPGslktgsnvrslsvtprrmensqqIKIISINNPLVFLNAKKFSADLMKIILKEtdgsqalddvskceqntllsplp 589
Cdd:TIGR00815 446 QTPPG-----------------------ILIFRVDGPLYFANAEDLKERLLKWLETL----------------------- 479
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 590 ngscteeasqpcPSEKYSLVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLD-TEKPIFFD 668
Cdd:TIGR00815 480 ------------ELDPQIIILDMSAVPFLDTSGIHALEELFKELKARGIQLLLANPNPAVISTLARAGFVElIGEEHFFP 547

                  ....*
gi 1958775104 669 SVATA 673
Cdd:TIGR00815 548 SVHDA 552
 
Name Accession Description Interval E-value
sulP TIGR00815
high affinity sulphate transporter 1; The SulP family is a large and ubiquitous family with ...
33-673 1.76e-92

high affinity sulphate transporter 1; The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out). [Transport and binding proteins, Anions]


Pssm-ID: 273284 [Multi-domain]  Cd Length: 552  Bit Score: 297.71  E-value: 1.76e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  33 PILEWAPQYNLKEnLLPDTVSGVLLAVQQVTQGLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISA 112
Cdd:TIGR00815   1 PVLRWLRKYRLKK-FKGDLMAGLTVGILLIPQAIAYAKLAGLPPIYGLYTSFVPPIIYALFGSSRHIAIGPTASVSLLLG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 113 NAVERLvpqsnrnlttqsnssvlGLSEFELQRIGVAAAVSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVT 192
Cdd:TIGR00815  80 SLVQRE-----------------GLQGLFDDYIRLAFTATLLAGIFQVIMGLLRLGFLIEYLSHAVLVGFTAGAAITIGL 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 193 SQVKYLLGIKMPYISGPLGFFY-IYAYVFENiksvQLEALLLSLLSIVVLVLVKELNEQFKRKIKVVLPVDLVLIIAASF 271
Cdd:TIGR00815 143 SQLKGLLGLSIFVKTDILGVVIsTWASLHQN----NWCTLVIGLLFLLFLLATKELGKRNKKLLWAPAPAPLLVVVLATL 218
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 272 ACYCTNMENtYGLEVVGRIPKGIP--PPRAPPMNILSAVLTEAFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGL 349
Cdd:TIGR00815 219 IVTIGLHDS-QGVSIVGHIPQGLSffPPITFTWQHLPTLAPDAIAIAIVGLTESILTARVFAAMTGYEIDANKELVALGI 297
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 350 SNVIPSFLFCIPSAAAMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGmLIQFRDLKK 429
Cdd:TIGR00815 298 ANIVGSFFSCYPATGSLSRTAVNYKAGCKTQLSAIVMAIVVLLVLLVLAPLFYYIPLAALAAIIISAAVG-LIDIRELYL 376
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 430 YWNVDKIDWGIWISTYIFTICFAANVGLLFGVVCTIAIVLGRFPRAKTLSITDMKEmelkvkTETYDNTENWPpskstNV 509
Cdd:TIGR00815 377 LWKADKMDFVVWLGTFLGVVFTSIEIGLLVGVSLSAFFFILRVARPRAAVLGRIPG------TEDYENIEQYP-----KA 445
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 510 KVFPGslktgsnvrslsvtprrmensqqIKIISINNPLVFLNAKKFSADLMKIILKEtdgsqalddvskceqntllsplp 589
Cdd:TIGR00815 446 QTPPG-----------------------ILIFRVDGPLYFANAEDLKERLLKWLETL----------------------- 479
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 590 ngscteeasqpcPSEKYSLVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLD-TEKPIFFD 668
Cdd:TIGR00815 480 ------------ELDPQIIILDMSAVPFLDTSGIHALEELFKELKARGIQLLLANPNPAVISTLARAGFVElIGEEHFFP 547

                  ....*
gi 1958775104 669 SVATA 673
Cdd:TIGR00815 548 SVHDA 552
Sulfate_transp pfam00916
Sulfate permease family; This family of integral membrane proteins are known as the Sulfate ...
47-444 6.50e-88

Sulfate permease family; This family of integral membrane proteins are known as the Sulfate Permease (SulP) family. SulP is a large family found in all domains of life. Although sulfate is a commonly transported ion there are many other activities in this family. See the TCDB description for a comprehensive summary.


Pssm-ID: 459995 [Multi-domain]  Cd Length: 379  Bit Score: 280.29  E-value: 6.50e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  47 LLPDTVSGVLLAVQQVTQGLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISANAVERLVPQSNRNl 126
Cdd:pfam00916   1 LKGDLIAGITVAILAIPQALAYAILAGLPPIYGLYSSFVPGFVYALFGTSRHLAIGPVAVLSLMVGAAIAKLAAKDPEL- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 127 ttqsnssvlglsefelqRIGVAAAVSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVTSQVKYLLGIkmPYI 206
Cdd:pfam00916  80 -----------------GIALAFTLTFLAGIIQLALGLLRLGFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGL--TNF 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 207 SGPLGFFYIYAYVFENIKSVQLEALLLSLLSIVVLVLVKELNEQFKRKIKVVLPVDLVLIIAASFACYCTNMENTYGLEV 286
Cdd:pfam00916 141 SGPGYVVSVLQSLFTNLDKVNLATLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATLVSAIFDLLRRYGVKI 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 287 VGRIPKGIPPPRAPPM--NILSAVLTEAFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGLSNVIPSFLFCIPSAA 364
Cdd:pfam00916 221 VGEIPSGLPPFSLPKFswSLLSALLPDALAIAIVGLLEAIAISKSFAKKKGYEVDSNQELVALGFANILSGLFGGYPATG 300
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 365 AMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGmLIQFRDLKKYWNVDKIDWGIWIST 444
Cdd:pfam00916 301 AFSRSAVNIKAGAKTPLSGIIMAVIVLLVLLFLTPLFAYIPKAVLAAIIIVAGKG-LIDYRELKHLWRLSKLDFLIWLAT 379
SUL1 COG0659
Sulfate permease or related transporter, MFS superfamily [Inorganic ion transport and ...
44-679 3.99e-70

Sulfate permease or related transporter, MFS superfamily [Inorganic ion transport and metabolism];


Pssm-ID: 440424 [Multi-domain]  Cd Length: 529  Bit Score: 237.70  E-value: 3.99e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  44 KENLLPDTVSGVLLAVQQVTQGLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISANAVErlvpqsn 123
Cdd:COG0659     4 RSNLRGDLLAGLTVALVALPLALAFAIAAGLPPEAGLYAAIVGGIVYALFGGSRLLISGPTAALAVVVAAAVA------- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 124 rnlttqsnssvlglsefELQRIGVAAAVSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVTSQVKYLLGIKM 203
Cdd:COG0659    77 -----------------PLGSLALLLAATLLAGVLQLLLGLLRLGRLARFIPRPVIVGFLAGIAILIILGQLPHLLGLPA 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 204 PyisgPLGFFYIYAYVFENIKSVQLEALLLSLLSIVVLVlvkelneqFKRKIKVVLPVDLVLIIAASFACYCTNMEntyg 283
Cdd:COG0659   140 P----GGSFLEKLAALLAALGEINPPTLALGLLTLAILL--------LLPRLLKRIPGPLVAVVLGTLLVWLLGLD---- 203
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 284 LEVVGRIPKGIPPPRAPPMNI--LSAVLTEAFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGLSNVIPSFLFCIP 361
Cdd:COG0659   204 VATVGEIPSGLPSFSLPDFSLetLRALLPPALTIALVGSIESLLTARAVDAMTGTRSDPNRELIAQGLANIASGLFGGLP 283
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 362 SAAAMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASI-IVVGLKgmLIQFRDLKKYWNVDKIDWGI 440
Cdd:COG0659   284 VTGSISRSAVNVKAGARTRLSGIVHALFLLLVLLFLAPLLAYIPLAALAAIlIVVGIG--LIDWRSFRRLWRAPRSDFLV 361
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 441 WISTYIFTICFAANVGLLFGVVCTIAIVLGRfpraktlsITDMKEMELKVKTETYDNTENWPpskstnvkvfpgslktgs 520
Cdd:COG0659   362 MLVTFLVTVFTDLLIGVLVGVLLSLLLFLRR--------VSRPHVVVLRVPGTHFRNVERHP------------------ 415
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 521 nvrslsvtprRMENSQQIKIISINNPLVFLNAKKFSADLMKIilketdgsqaLDDVSKceqntllsplpngscteeasqp 600
Cdd:COG0659   416 ----------EAETGPGVLVYRLDGPLFFGNAERLKERLDAL----------APDPRV---------------------- 453
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 601 cpsekysLVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLDTEKPI-FFDSVATAISVIQS 679
Cdd:COG0659   454 -------VILDLSAVPFIDATALEALEELAERLRARGITLELAGLKPPVRDLLERAGLLDELGEErVFPDLDEALEAAEE 526
PRK11660 PRK11660
putative transporter; Provisional
37-501 9.67e-18

putative transporter; Provisional


Pssm-ID: 183265 [Multi-domain]  Cd Length: 568  Bit Score: 86.93  E-value: 9.67e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  37 WAPQYNLKEnLLPDTVSGVLLAVQQVTQGLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLIsanave 116
Cdd:PRK11660   20 WKEKYTAAR-FTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVI------ 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 117 rLVPqsnrnLTTQsnssvLGLSefelqriGVAAAvSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVTSQVK 196
Cdd:PRK11660   93 -LYP-----VSQQ-----FGLA-------GLLVA-TLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIK 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 197 YLLGIKMPyiSGPLGFFYIYAYVFENIKSVQLEALLLSLLSIVVLVlvkelneqFKRKIKVVLPVDLVLIIAASFACYct 276
Cdd:PRK11660  154 DFFGLQMA--HVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLI--------LWPRLKIRLPGHLPALLAGTAVMG-- 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 277 nMENTYGLEVV------------GRIPKGIPP-------------PRAPPMNI----LSAVLTEAFGVALVGYVASLALA 327
Cdd:PRK11660  222 -VLNLLGGHVAtigsrfhyvladGSQGNGIPPllpqfvlpwnlpgADGQPFTLswdlIRALLPAAFSMAMLGAIESLLCA 300
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 328 ---QG-SAKKFkysvDDNQEFLAHGLSNVIPSFLFCIPSAAAMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYW 403
Cdd:PRK11660  301 vvlDGmTGTKH----SANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSY 376
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 404 LPMCVLASIIVVGLKGM--LIQFRDLKKYWNVDKIdwgiwistYIFTICFAANVglLFGVVCTIA--IVLgrfprAKTLS 479
Cdd:PRK11660  377 LPLSAMAALLLMVAWNMseAHKVVDLLRHAPKDDI--------IVMLLCMSLTV--LFDMVIAISvgIVL-----ASLLF 441
                         490       500
                  ....*....|....*....|..
gi 1958775104 480 ITDMKEMELKVKTETYDNTENW 501
Cdd:PRK11660  442 MRRIAEMTRLAPISVQDVPDDV 463
STAS_SulP_like_sulfate_transporter cd07042
Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, ...
533-668 2.90e-11

Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.


Pssm-ID: 132913 [Multi-domain]  Cd Length: 107  Bit Score: 60.72  E-value: 2.90e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 533 ENSQQIKIISINNPLVFLNAKKFSADLMKIIlketdgsqalddvskceqntllsplpngscteeasQPCPSEKYsLVLNC 612
Cdd:cd07042     5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLV-----------------------------------DEDPPLKV-VILDL 48
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958775104 613 SGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLDTEKPIFFD 668
Cdd:cd07042    49 SAVNFIDSTAAEALEELVKDLRKRGVELYLAGLNPQVRELLERAGLLDEIGEENFF 104
 
Name Accession Description Interval E-value
sulP TIGR00815
high affinity sulphate transporter 1; The SulP family is a large and ubiquitous family with ...
33-673 1.76e-92

high affinity sulphate transporter 1; The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out). [Transport and binding proteins, Anions]


Pssm-ID: 273284 [Multi-domain]  Cd Length: 552  Bit Score: 297.71  E-value: 1.76e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  33 PILEWAPQYNLKEnLLPDTVSGVLLAVQQVTQGLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISA 112
Cdd:TIGR00815   1 PVLRWLRKYRLKK-FKGDLMAGLTVGILLIPQAIAYAKLAGLPPIYGLYTSFVPPIIYALFGSSRHIAIGPTASVSLLLG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 113 NAVERLvpqsnrnlttqsnssvlGLSEFELQRIGVAAAVSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVT 192
Cdd:TIGR00815  80 SLVQRE-----------------GLQGLFDDYIRLAFTATLLAGIFQVIMGLLRLGFLIEYLSHAVLVGFTAGAAITIGL 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 193 SQVKYLLGIKMPYISGPLGFFY-IYAYVFENiksvQLEALLLSLLSIVVLVLVKELNEQFKRKIKVVLPVDLVLIIAASF 271
Cdd:TIGR00815 143 SQLKGLLGLSIFVKTDILGVVIsTWASLHQN----NWCTLVIGLLFLLFLLATKELGKRNKKLLWAPAPAPLLVVVLATL 218
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 272 ACYCTNMENtYGLEVVGRIPKGIP--PPRAPPMNILSAVLTEAFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGL 349
Cdd:TIGR00815 219 IVTIGLHDS-QGVSIVGHIPQGLSffPPITFTWQHLPTLAPDAIAIAIVGLTESILTARVFAAMTGYEIDANKELVALGI 297
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 350 SNVIPSFLFCIPSAAAMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGmLIQFRDLKK 429
Cdd:TIGR00815 298 ANIVGSFFSCYPATGSLSRTAVNYKAGCKTQLSAIVMAIVVLLVLLVLAPLFYYIPLAALAAIIISAAVG-LIDIRELYL 376
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 430 YWNVDKIDWGIWISTYIFTICFAANVGLLFGVVCTIAIVLGRFPRAKTLSITDMKEmelkvkTETYDNTENWPpskstNV 509
Cdd:TIGR00815 377 LWKADKMDFVVWLGTFLGVVFTSIEIGLLVGVSLSAFFFILRVARPRAAVLGRIPG------TEDYENIEQYP-----KA 445
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 510 KVFPGslktgsnvrslsvtprrmensqqIKIISINNPLVFLNAKKFSADLMKIILKEtdgsqalddvskceqntllsplp 589
Cdd:TIGR00815 446 QTPPG-----------------------ILIFRVDGPLYFANAEDLKERLLKWLETL----------------------- 479
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 590 ngscteeasqpcPSEKYSLVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLD-TEKPIFFD 668
Cdd:TIGR00815 480 ------------ELDPQIIILDMSAVPFLDTSGIHALEELFKELKARGIQLLLANPNPAVISTLARAGFVElIGEEHFFP 547

                  ....*
gi 1958775104 669 SVATA 673
Cdd:TIGR00815 548 SVHDA 552
Sulfate_transp pfam00916
Sulfate permease family; This family of integral membrane proteins are known as the Sulfate ...
47-444 6.50e-88

Sulfate permease family; This family of integral membrane proteins are known as the Sulfate Permease (SulP) family. SulP is a large family found in all domains of life. Although sulfate is a commonly transported ion there are many other activities in this family. See the TCDB description for a comprehensive summary.


Pssm-ID: 459995 [Multi-domain]  Cd Length: 379  Bit Score: 280.29  E-value: 6.50e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  47 LLPDTVSGVLLAVQQVTQGLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISANAVERLVPQSNRNl 126
Cdd:pfam00916   1 LKGDLIAGITVAILAIPQALAYAILAGLPPIYGLYSSFVPGFVYALFGTSRHLAIGPVAVLSLMVGAAIAKLAAKDPEL- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 127 ttqsnssvlglsefelqRIGVAAAVSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVTSQVKYLLGIkmPYI 206
Cdd:pfam00916  80 -----------------GIALAFTLTFLAGIIQLALGLLRLGFLVTFLSHAVISGFMGGAAIVILLSQLKVLLGL--TNF 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 207 SGPLGFFYIYAYVFENIKSVQLEALLLSLLSIVVLVLVKELNEQFKRKIKVVLPVDLVLIIAASFACYCTNMENTYGLEV 286
Cdd:pfam00916 141 SGPGYVVSVLQSLFTNLDKVNLATLVLGLLVLVILLFTKELGKKYKKLFWIPAPAPLVAVVLATLVSAIFDLLRRYGVKI 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 287 VGRIPKGIPPPRAPPM--NILSAVLTEAFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGLSNVIPSFLFCIPSAA 364
Cdd:pfam00916 221 VGEIPSGLPPFSLPKFswSLLSALLPDALAIAIVGLLEAIAISKSFAKKKGYEVDSNQELVALGFANILSGLFGGYPATG 300
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 365 AMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASIIVVGLKGmLIQFRDLKKYWNVDKIDWGIWIST 444
Cdd:pfam00916 301 AFSRSAVNIKAGAKTPLSGIIMAVIVLLVLLFLTPLFAYIPKAVLAAIIIVAGKG-LIDYRELKHLWRLSKLDFLIWLAT 379
SUL1 COG0659
Sulfate permease or related transporter, MFS superfamily [Inorganic ion transport and ...
44-679 3.99e-70

Sulfate permease or related transporter, MFS superfamily [Inorganic ion transport and metabolism];


Pssm-ID: 440424 [Multi-domain]  Cd Length: 529  Bit Score: 237.70  E-value: 3.99e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  44 KENLLPDTVSGVLLAVQQVTQGLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLISANAVErlvpqsn 123
Cdd:COG0659     4 RSNLRGDLLAGLTVALVALPLALAFAIAAGLPPEAGLYAAIVGGIVYALFGGSRLLISGPTAALAVVVAAAVA------- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 124 rnlttqsnssvlglsefELQRIGVAAAVSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVTSQVKYLLGIKM 203
Cdd:COG0659    77 -----------------PLGSLALLLAATLLAGVLQLLLGLLRLGRLARFIPRPVIVGFLAGIAILIILGQLPHLLGLPA 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 204 PyisgPLGFFYIYAYVFENIKSVQLEALLLSLLSIVVLVlvkelneqFKRKIKVVLPVDLVLIIAASFACYCTNMEntyg 283
Cdd:COG0659   140 P----GGSFLEKLAALLAALGEINPPTLALGLLTLAILL--------LLPRLLKRIPGPLVAVVLGTLLVWLLGLD---- 203
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 284 LEVVGRIPKGIPPPRAPPMNI--LSAVLTEAFGVALVGYVASLALAQGSAKKFKYSVDDNQEFLAHGLSNVIPSFLFCIP 361
Cdd:COG0659   204 VATVGEIPSGLPSFSLPDFSLetLRALLPPALTIALVGSIESLLTARAVDAMTGTRSDPNRELIAQGLANIASGLFGGLP 283
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 362 SAAAMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYWLPMCVLASI-IVVGLKgmLIQFRDLKKYWNVDKIDWGI 440
Cdd:COG0659   284 VTGSISRSAVNVKAGARTRLSGIVHALFLLLVLLFLAPLLAYIPLAALAAIlIVVGIG--LIDWRSFRRLWRAPRSDFLV 361
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 441 WISTYIFTICFAANVGLLFGVVCTIAIVLGRfpraktlsITDMKEMELKVKTETYDNTENWPpskstnvkvfpgslktgs 520
Cdd:COG0659   362 MLVTFLVTVFTDLLIGVLVGVLLSLLLFLRR--------VSRPHVVVLRVPGTHFRNVERHP------------------ 415
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 521 nvrslsvtprRMENSQQIKIISINNPLVFLNAKKFSADLMKIilketdgsqaLDDVSKceqntllsplpngscteeasqp 600
Cdd:COG0659   416 ----------EAETGPGVLVYRLDGPLFFGNAERLKERLDAL----------APDPRV---------------------- 453
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 601 cpsekysLVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLDTEKPI-FFDSVATAISVIQS 679
Cdd:COG0659   454 -------VILDLSAVPFIDATALEALEELAERLRARGITLELAGLKPPVRDLLERAGLLDELGEErVFPDLDEALEAAEE 526
PRK11660 PRK11660
putative transporter; Provisional
37-501 9.67e-18

putative transporter; Provisional


Pssm-ID: 183265 [Multi-domain]  Cd Length: 568  Bit Score: 86.93  E-value: 9.67e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  37 WAPQYNLKEnLLPDTVSGVLLAVQQVTQGLSFAILSSVHPVFGLYGSLFPAIIYAIFGMGRHVATGTFALTSLIsanave 116
Cdd:PRK11660   20 WKEKYTAAR-FTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVI------ 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 117 rLVPqsnrnLTTQsnssvLGLSefelqriGVAAAvSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVTSQVK 196
Cdd:PRK11660   93 -LYP-----VSQQ-----FGLA-------GLLVA-TLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIK 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 197 YLLGIKMPyiSGPLGFFYIYAYVFENIKSVQLEALLLSLLSIVVLVlvkelneqFKRKIKVVLPVDLVLIIAASFACYct 276
Cdd:PRK11660  154 DFFGLQMA--HVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLI--------LWPRLKIRLPGHLPALLAGTAVMG-- 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 277 nMENTYGLEVV------------GRIPKGIPP-------------PRAPPMNI----LSAVLTEAFGVALVGYVASLALA 327
Cdd:PRK11660  222 -VLNLLGGHVAtigsrfhyvladGSQGNGIPPllpqfvlpwnlpgADGQPFTLswdlIRALLPAAFSMAMLGAIESLLCA 300
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 328 ---QG-SAKKFkysvDDNQEFLAHGLSNVIPSFLFCIPSAAAMGRTAGLYSTGAKTQVACLISCIFVLIVIYAIGPLLYW 403
Cdd:PRK11660  301 vvlDGmTGTKH----SANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSY 376
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 404 LPMCVLASIIVVGLKGM--LIQFRDLKKYWNVDKIdwgiwistYIFTICFAANVglLFGVVCTIA--IVLgrfprAKTLS 479
Cdd:PRK11660  377 LPLSAMAALLLMVAWNMseAHKVVDLLRHAPKDDI--------IVMLLCMSLTV--LFDMVIAISvgIVL-----ASLLF 441
                         490       500
                  ....*....|....*....|..
gi 1958775104 480 ITDMKEMELKVKTETYDNTENW 501
Cdd:PRK11660  442 MRRIAEMTRLAPISVQDVPDDV 463
STAS_SulP_like_sulfate_transporter cd07042
Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, ...
533-668 2.90e-11

Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.


Pssm-ID: 132913 [Multi-domain]  Cd Length: 107  Bit Score: 60.72  E-value: 2.90e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 533 ENSQQIKIISINNPLVFLNAKKFSADLMKIIlketdgsqalddvskceqntllsplpngscteeasQPCPSEKYsLVLNC 612
Cdd:cd07042     5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLV-----------------------------------DEDPPLKV-VILDL 48
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958775104 613 SGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLDTEKPIFFD 668
Cdd:cd07042    49 SAVNFIDSTAAEALEELVKDLRKRGVELYLAGLNPQVRELLERAGLLDEIGEENFF 104
STAS pfam01740
STAS domain; The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is ...
538-673 7.59e-09

STAS domain; The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.


Pssm-ID: 426404 [Multi-domain]  Cd Length: 106  Bit Score: 53.77  E-value: 7.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104 538 IKIISINNPLVFLNAKKFSADLMKIILKETDGSqalddvskceqntllsplpngscteeasqpcpsekysLVLNCSGLTF 617
Cdd:pfam01740  10 ILILRLDGPLDFANAESLRERLLRALEEGEIKH-------------------------------------VVLDLSAVPF 52
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958775104 618 FDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMTYYGDLDTEKpiFFDSVATA 673
Cdd:pfam01740  53 IDSSGLGALEELYKELRRRGVELVLVGPSPEVARTLEKTGLDDIIK--IFPTVAEA 106
STAS_anti-anti-sigma_factors cd07043
Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key ...
608-654 1.32e-03

Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.


Pssm-ID: 132914 [Multi-domain]  Cd Length: 99  Bit Score: 38.66  E-value: 1.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1958775104 608 LVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMT 654
Cdd:cd07043    41 LVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLE 87
ant_ant_sig TIGR00377
anti-anti-sigma factor; This superfamily includes small (105-125 residue) proteins related to ...
593-659 1.51e-03

anti-anti-sigma factor; This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins. [Regulatory functions, Protein interactions]


Pssm-ID: 273042 [Multi-domain]  Cd Length: 108  Bit Score: 38.74  E-value: 1.51e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958775104 593 CTEEASQPCPSEkysLVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIK--AMTYYGDL 659
Cdd:TIGR00377  34 VTPAAERTGIRP---IVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVSPRVARllDITGLLRI 99
CodB COG1457
Purine-cytosine permease or related protein [Nucleotide transport and metabolism];
51-193 2.57e-03

Purine-cytosine permease or related protein [Nucleotide transport and metabolism];


Pssm-ID: 441066 [Multi-domain]  Cd Length: 448  Bit Score: 41.01  E-value: 2.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958775104  51 TVSGVLLAVQQVTQGLSFAILSsvHPVFGLYGSLFPAIIYAIFGMgrhvatGTFALTSLISANAVERLVPQSNRNLTT-- 128
Cdd:COG1457    75 FLLGALIAYIGARTGLPTMLLS--RAAFGYRGSTLPSLLNALTTI------GWFAVEAAIAAQALAALLGGLGIPLVLay 146
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958775104 129 ------QSNSSVLG---LSEFELqrigVAAAVSFLGGVIQLVMFVLQLGNATFLLTEPVISAMTTGAATHVVTS 193
Cdd:COG1457   147 livgllVILLAIFGyraISRLQR----WAVPLLLVLFVLLVVLALSHPGLSALLAYPPGSSPLSFGAAVSVVAG 216
SpoIIAA COG1366
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction ...
608-654 4.50e-03

Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms];


Pssm-ID: 440977 [Multi-domain]  Cd Length: 93  Bit Score: 36.76  E-value: 4.50e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1958775104 608 LVLNCSGLTFFDYTGVSTLVELYLDCKSRSVDVFLANCTASLIKAMT 654
Cdd:COG1366    42 VVLDLSGVTFIDSSGLGALLSLAKAARLLGGRLVLVGVSPAVARVLE 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH