ubiquitin-associated protein 2 isoform X7 [Rattus norvegicus]
Protein Classification
lingerer family protein( domain architecture ID 10198271)
lingerer family protein similar to Drosophila pseudoobscura protein lingerer that acts in the nervous system to mediate the control of copulatory organs during courtship
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| UBA_UBP2_like | cd14277 | UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains ... |
59-96 | 4.11e-17 | ||
UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains some uncharacterized ubiquitin-associated proteins, including UBAP-2 and its homolog, UBAP2-like [UBP2L, also called protein NICE-4 (for newly identified cDNA from the epidermal differentiation complex EDC)], both of which contain an N-terminal ubiquitin-associated (UBA) domain along with a highly conserved, but function unknown domain (DUF3697). : Pssm-ID: 270463 Cd Length: 38 Bit Score: 75.68 E-value: 4.11e-17
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| DUF3697 | pfam12478 | Ubiquitin-associated protein 2; This domain family is found in eukaryotes, and is ... |
518-547 | 2.13e-06 | ||
Ubiquitin-associated protein 2; This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00627. There are two conserved sequence motifs: AVEMPG and QFG. : Pssm-ID: 372135 [Multi-domain] Cd Length: 32 Bit Score: 45.12 E-value: 2.13e-06
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| Name | Accession | Description | Interval | E-value | ||
| UBA_UBP2_like | cd14277 | UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains ... |
59-96 | 4.11e-17 | ||
UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains some uncharacterized ubiquitin-associated proteins, including UBAP-2 and its homolog, UBAP2-like [UBP2L, also called protein NICE-4 (for newly identified cDNA from the epidermal differentiation complex EDC)], both of which contain an N-terminal ubiquitin-associated (UBA) domain along with a highly conserved, but function unknown domain (DUF3697). Pssm-ID: 270463 Cd Length: 38 Bit Score: 75.68 E-value: 4.11e-17
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| DUF3697 | pfam12478 | Ubiquitin-associated protein 2; This domain family is found in eukaryotes, and is ... |
518-547 | 2.13e-06 | ||
Ubiquitin-associated protein 2; This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00627. There are two conserved sequence motifs: AVEMPG and QFG. Pssm-ID: 372135 [Multi-domain] Cd Length: 32 Bit Score: 45.12 E-value: 2.13e-06
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| UBA | smart00165 | Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 ... |
60-96 | 1.85e-05 | ||
Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin. Pssm-ID: 197551 [Multi-domain] Cd Length: 37 Bit Score: 42.47 E-value: 1.85e-05
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| Name | Accession | Description | Interval | E-value | ||
| UBA_UBP2_like | cd14277 | UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains ... |
59-96 | 4.11e-17 | ||
UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins; The family contains some uncharacterized ubiquitin-associated proteins, including UBAP-2 and its homolog, UBAP2-like [UBP2L, also called protein NICE-4 (for newly identified cDNA from the epidermal differentiation complex EDC)], both of which contain an N-terminal ubiquitin-associated (UBA) domain along with a highly conserved, but function unknown domain (DUF3697). Pssm-ID: 270463 Cd Length: 38 Bit Score: 75.68 E-value: 4.11e-17
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| DUF3697 | pfam12478 | Ubiquitin-associated protein 2; This domain family is found in eukaryotes, and is ... |
518-547 | 2.13e-06 | ||
Ubiquitin-associated protein 2; This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00627. There are two conserved sequence motifs: AVEMPG and QFG. Pssm-ID: 372135 [Multi-domain] Cd Length: 32 Bit Score: 45.12 E-value: 2.13e-06
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| UBA_like_SF | cd00194 | UBA domain-like superfamily; The ubiquitin-associated (UBA) domain-like superfamily contains ... |
66-93 | 7.49e-06 | ||
UBA domain-like superfamily; The ubiquitin-associated (UBA) domain-like superfamily contains alpha-helical structural homology ubiquitin-binding domains, including UBA domains and coupling of ubiquitin conjugation to endoplasmic reticulum degradation (CUE) domains which share a common three-helical bundle architecture. UBA domains are commonly occurring sequence motifs found in proteins involved in ubiquitin-mediated proteolysis. They contribute to ubiquitin (Ub) binding or ubiquitin-like (UbL) domain binding. However, some kinds of UBA domains can only bind the UbL domain, but not the Ub domain. UBA domains are normally comprised of compact three-helix bundles which contain a conserved GF/Y-loop. They can bind polyubiquitin with high affinity. They also bind monoubiquitin and other proteins. Most UBA domain-containing proteins have one UBA domain, but some harbor two or three UBA domains. CUE domain containing proteins are characterized by an FP and a di-leucine-like sequence and bind to monoubiquitin with varying affinities. Some higher eukaryotic CUE domain proteins do not bind monoubiquitin efficiently, since they carry LP, rather than FP among CUE domains. This superfamily also includes many UBA-like domains found in AMP-activated protein kinase (AMPK) related kinases, the NXF family of mRNA nuclear export factors, elongation factor Ts (EF-Ts), nascent polypeptide-associated complex subunit alpha (NACA) and similar proteins. Although many UBA-like domains may have a conserved TG but not GF/Y-loop, they still show a high level of structural and sequence similarity with three-helical ubiquitin binding domains. Pssm-ID: 270455 Cd Length: 28 Bit Score: 43.55 E-value: 7.49e-06
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| UBA | smart00165 | Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 ... |
60-96 | 1.85e-05 | ||
Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin. Pssm-ID: 197551 [Multi-domain] Cd Length: 37 Bit Score: 42.47 E-value: 1.85e-05
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| UBA_II_E2_UBC27_like | cd14312 | UBA domain found in plant ubiquitin-conjugating enzyme E2 27 and similar proteins; UBC27, also ... |
60-96 | 9.53e-03 | ||
UBA domain found in plant ubiquitin-conjugating enzyme E2 27 and similar proteins; UBC27, also called ubiquitin carrier protein 27, functions as a class II ubiquitin-conjugating (UBC) enzyme (E2). E2, together with E1 (ubiquitin-activating enzyme UBA) and E3 (ubiquitin ligase), is required in the multi-step reaction of ubiquitin conjugation. Unlike other Arabidopsis UBCs, in addition to an N-terminal ubiquitin-conjugating enzyme E2 catalytic domain (UBCc), UBC27 has an additional C-terminal ubiquitin-associated domain (UBA). Pssm-ID: 270497 Cd Length: 36 Bit Score: 35.01 E-value: 9.53e-03
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