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Conserved domains on  [gi|1958778208|ref|XP_038966582|]
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small integral membrane protein 1 isoform X1 [Rattus norvegicus]

Protein Classification

small integral membrane protein 1( domain architecture ID 11239511)

small integral membrane protein 1 (SMIM1) is a DUF4731 domain-containing protein that acts as a regulator of red blood cell formation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4731 pfam15875
Domain of unknown function (DUF4731); This family of proteins is found in eukaryotes. Proteins ...
 3-77 4.34e-36

Domain of unknown function (DUF4731); This family of proteins is found in eukaryotes. Proteins in this family are typically between 37 and 78 amino acids in length.


:

Pssm-ID: 464917  Cd Length: 75  Bit Score: 116.03  E-value: 4.34e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958778208  3 SQESGVHYSRWDSSSRDEVSMSAMSSSEEASCYKRISQKLCSGKLGIAMKVLGGVALFWIIFILGYITGYYVHKC 77
Cdd:pfam15875  1 PQESSVQYSRWNESSRDEVSVAAVSSTSEASGWKRISQKLCTGKLGIAMKVLGGVALFWVVFILGYVTGYYVHKC 75
 
Name Accession Description Interval E-value
DUF4731 pfam15875
Domain of unknown function (DUF4731); This family of proteins is found in eukaryotes. Proteins ...
 3-77 4.34e-36

Domain of unknown function (DUF4731); This family of proteins is found in eukaryotes. Proteins in this family are typically between 37 and 78 amino acids in length.


Pssm-ID: 464917  Cd Length: 75  Bit Score: 116.03  E-value: 4.34e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958778208  3 SQESGVHYSRWDSSSRDEVSMSAMSSSEEASCYKRISQKLCSGKLGIAMKVLGGVALFWIIFILGYITGYYVHKC 77
Cdd:pfam15875  1 PQESSVQYSRWNESSRDEVSVAAVSSTSEASGWKRISQKLCTGKLGIAMKVLGGVALFWVVFILGYVTGYYVHKC 75
 
Name Accession Description Interval E-value
DUF4731 pfam15875
Domain of unknown function (DUF4731); This family of proteins is found in eukaryotes. Proteins ...
 3-77 4.34e-36

Domain of unknown function (DUF4731); This family of proteins is found in eukaryotes. Proteins in this family are typically between 37 and 78 amino acids in length.


Pssm-ID: 464917  Cd Length: 75  Bit Score: 116.03  E-value: 4.34e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958778208  3 SQESGVHYSRWDSSSRDEVSMSAMSSSEEASCYKRISQKLCSGKLGIAMKVLGGVALFWIIFILGYITGYYVHKC 77
Cdd:pfam15875  1 PQESSVQYSRWNESSRDEVSVAAVSSTSEASGWKRISQKLCTGKLGIAMKVLGGVALFWVVFILGYVTGYYVHKC 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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