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Conserved domains on  [gi|1958779054|ref|XP_038966876|]
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oxidative stress-induced growth inhibitor 2 isoform X3 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdhS super family cl26175
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
109-185 2.65e-05

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


The actual alignment was detected with superfamily member COG4529:

Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 46.10  E-value: 2.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958779054 109 RVAGGSHVPfclfAENVALATGTLdSPAHLEVEGEEFPFVFHSM--PEFGAAINSGklcgrvDPVLIVGSGLTAADAVL 185
Cdd:COG4529   142 TLADGETLR----ADAVVLATGHP-PPAPPPGLAAGSPRYIADPwpPGALARIPPD------ARVLIIGTGLTAIDVVL 209
 
Name Accession Description Interval E-value
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
109-185 2.65e-05

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 46.10  E-value: 2.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958779054 109 RVAGGSHVPfclfAENVALATGTLdSPAHLEVEGEEFPFVFHSM--PEFGAAINSGklcgrvDPVLIVGSGLTAADAVL 185
Cdd:COG4529   142 TLADGETLR----ADAVVLATGHP-PPAPPPGLAAGSPRYIADPwpPGALARIPPD------ARVLIIGTGLTAIDVVL 209
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
 125-200 1.27e-03

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 40.36  E-value: 1.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958779054 125 VALATGTLDSpAHLEVEGEEFPFVFHSMpEFGAAINSGKLC----GRVDP-----VLIVGSGLTAADAVLCAYNNNI-PV 194
Cdd:PRK12770  122 VLIATGTWKS-RKLGIPGEDLPGVYSAL-EYLFRIRAAKLGylpwEKVPPvegkkVVVVGAGLTAVDAALEAVLLGAeKV 199


                  ....*.
gi 1958779054 195 IHVFRR 200
Cdd:PRK12770  200 YLAYRR 205
 
Name Accession Description Interval E-value
YdhS COG4529
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
109-185 2.65e-05

Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];


Pssm-ID: 443597 [Multi-domain]  Cd Length: 466  Bit Score: 46.10  E-value: 2.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958779054 109 RVAGGSHVPfclfAENVALATGTLdSPAHLEVEGEEFPFVFHSM--PEFGAAINSGklcgrvDPVLIVGSGLTAADAVL 185
Cdd:COG4529   142 TLADGETLR----ADAVVLATGHP-PPAPPPGLAAGSPRYIADPwpPGALARIPPD------ARVLIIGTGLTAIDVVL 209
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 125-187 1.08e-03

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 40.89  E-value: 1.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958779054 125 VALATGTLDsPAHLEVEGEEFPFVFHSMpEFGAAINSGKLCGRVDP----VLIVGSGLTAADAVLCA 187
Cdd:COG0493   210 VFLATGAGK-PRDLGIPGEDLKGVHSAM-DFLTAVNLGEAPDTILAvgkrVVVIGGGNTAMDCARTA 274
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
 125-200 1.27e-03

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 40.36  E-value: 1.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958779054 125 VALATGTLDSpAHLEVEGEEFPFVFHSMpEFGAAINSGKLC----GRVDP-----VLIVGSGLTAADAVLCAYNNNI-PV 194
Cdd:PRK12770  122 VLIATGTWKS-RKLGIPGEDLPGVYSAL-EYLFRIRAAKLGylpwEKVPPvegkkVVVVGAGLTAVDAALEAVLLGAeKV 199


                  ....*.
gi 1958779054 195 IHVFRR 200
Cdd:PRK12770  200 YLAYRR 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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