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Conserved domains on  [gi|1958784381|ref|XP_038968728|]
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peptidyl-prolyl cis-trans isomerase FKBP1B isoform X3 [Rattus norvegicus]

Protein Classification

FKBP-type peptidyl-prolyl cis-trans isomerase( domain architecture ID 10446594)

FKBP-type peptidyl-prolyl cis-trans isomerase acts as a PPIase that accelerates the folding of proteins

CATH:  3.10.50.40
EC:  5.2.1.8
Gene Ontology:  GO:0003755|GO:0000413|GO:0061077
PubMed:  27664121
SCOP:  4001062

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
6-68 3.26e-16

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 67.22  E-value: 3.26e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958784381   6 ETISPGD-------GMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQLCpchldvAFSRRILTVP 68
Cdd:pfam00254   3 EKAKKGDrvtvhytGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMK------VGEKRKLTIP 66
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
6-68 3.26e-16

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 67.22  E-value: 3.26e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958784381   6 ETISPGD-------GMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQLCpchldvAFSRRILTVP 68
Cdd:pfam00254   3 EKAKKGDrvtvhytGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMK------VGEKRKLTIP 66
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 6-47 3.41e-13

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 59.81  E-value: 3.41e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1958784381   6 ETISPGD-------GMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEG 47
Cdd:COG0545    12 AKPKAGDtvtvhytGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEG 60
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
6-68 3.26e-16

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 67.22  E-value: 3.26e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958784381   6 ETISPGD-------GMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQLCpchldvAFSRRILTVP 68
Cdd:pfam00254   3 EKAKKGDrvtvhytGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMK------VGEKRKLTIP 66
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 6-47 3.41e-13

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 59.81  E-value: 3.41e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1958784381   6 ETISPGD-------GMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEG 47
Cdd:COG0545    12 AKPKAGDtvtvhytGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEG 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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