Alternaria (ID 612050) - BioProject

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Accession: PRJNA612050 ID: 612050

Alternaria

Whole genome sequencing of Alternaria species (Illumina)

Whole genome sequencing of Alternaria species. Assembled from Illumina short-read data.

Accession	PRJNA612050
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Alternaria[Taxonomy ID: 5598] Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Alternaria
Publications (total 3) Less...	Dettman JR et al., "Alternaria sections Infectoriae and Pseudoalternaria: New genomic resources, phylogenomic analyses, and biodiversity.", Mycologia, 2024 Sep-Oct;116(5):659-672 More... Dettman JR et al., "Alternaria sections Infectoriae and Pseudoalternaria: New genomic resources, phylogenomic analyses, and biodiversity.", Mycologia, 2024 Sep-Oct;116(5):659-672 Witte TE et al., "Untargeted metabolomics screening reveals unique secondary metabolite production from Alternaria section Alternaria.", Front Mol Biosci, 2022;9:1038299 Dettman JR et al., "Phylogenomic analyses of Alternaria section Alternaria: A high-resolution, genome-wide study of lineage sorting and gene tree discordance.", Mycologia, 2021 Nov-Dec;113(6):1218-1232 Less...
Submission	Registration date: 3-Nov-2021 Agriculture and Agri-Food Canada
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	29
Publications
PubMed	3
PMC	1
Other datasets
BioSample	84
Assembly	30

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

30
30

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_040783835.1	JAERND000000000	SAMN17305253	KAS5743	Alternaria alternata
GCA_020736755.1	JAAOQU000000000	SAMN14360538	DET2019	Alternaria alternata
GCA_020736745.1	JAAOQV000000000	SAMN14360537	DET2010	Alternaria alternata
GCA_020736765.1	JAAOQT000000000	SAMN14360539	KAS5516	Alternaria alternata
GCA_020736775.1	JAAOQX000000000	SAMN14360535	DET2001	Alternaria alternata
GCA_040783815.1	JAERPI000000000	SAMN17305196	DET2035	Alternaria arborescens
GCA_040783855.1	JAERNY000000000	SAMN17305232	KAS5321	Alternaria arborescens
GCA_020736785.1	JAAOQW000000000	SAMN14360536	DET2008	Alternaria arborescens
GCA_040583865.1	JAVSBR000000000	SAMN37442357	DAOMC238834	Alternaria arbusti
GCA_040584035.1	JAVSBL000000000	SAMN37442350	DAOMC195272	Alternaria conjuncta
GCA_040583925.1	JAVSBP000000000	SAMN37442354	DAOMC238797	Alternaria ethzedia
GCA_040583895.1	JAVYJP000000000	SAMN37442355	DAOMC238798	Alternaria metachromatica
GCA_040583965.1	JAVSBO000000000	SAMN37442353	DAOMC238619	Alternaria oregonensis
GCA_040584015.1	JAVSBM000000000	SAMN37442351	DAOMC225332	Alternaria sp. DAOMC 225332
GCA_040583805.1	JAERPH000000000	SAMN17305197	DET2042	Alternaria sp. DET2042
GCA_040583825.1	JAERPF000000000	SAMN17305199	DET2072	Alternaria sp. DET2072
GCA_040583765.1	JAEROZ000000000	SAMN17305205	DET2103	Alternaria sp. DET2103
GCA_040583745.1	JAEROY000000000	SAMN17305206	DET2104	Alternaria sp. DET2104
GCA_040583725.1	JAEROX000000000	SAMN17305207	DET2105	Alternaria sp. DET2105
GCA_040583705.1	JAEROW000000000	SAMN17305208	DET2106	Alternaria sp. DET2106
GCA_040583685.1	JAEROV000000000	SAMN17305209	DET2107	Alternaria sp. DET2107
GCA_040583665.1	JAERNQ000000000	SAMN17305240	KAS5446	Alternaria sp. KAS5446
GCA_040583645.1	JAERNP000000000	SAMN17305241	KAS5449	Alternaria sp. KAS5449
GCA_040583605.1	JAERNN000000000	SAMN17305243	KAS5470	Alternaria sp. KAS5470
GCA_040583625.1	JAERNM000000000	SAMN17305244	KAS5474	Alternaria sp. KAS5474
GCA_040583575.1	JAERNL000000000	SAMN17305245	KAS5477	Alternaria sp. KAS5477
GCA_040583525.1	JAERNK000000000	SAMN17305246	KAS5486	Alternaria sp. KAS5486
GCA_040583505.1	JAERNG000000000	SAMN17305250	KAS5506	Alternaria sp. KAS5506
GCA_040583915.1	JAVSBQ000000000	SAMN37442356	DAOMC238806	Alternaria triticimaculans
GCA_040583995.1	JAVSBN000000000	SAMN37442352	DAOMC238612	Alternaria triticina

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Alternaria

Whole genome sequencing of Alternaria species (Illumina)

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