Asterionella formosa isolate:BG1 (ID 340070) - BioProject

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Accession: PRJNA340070 ID: 340070

Asterionella formosa isolate:BG1

Asterionella formosa and associated bacteria Genome sequencing

See Genome Information for Asterionella formosa

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1 additional project is related by organism.

The freshwater diatom Asterionella formosa and its associated bacteria are studied at the cellular and molecular levels in order to understand and optimise their interactions to improve the bioprocessing potential of the alga.

Accession	PRJNA340070
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Asterionella formosa[Taxonomy ID: 210441] Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta; Fragilariophyceae; Fragilariophycidae; Fragilariales; Fragilariaceae; Asterionella; Asterionella formosa
Submission	Registration date: 16-Aug-2017 CNRS-AMU
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	12719
WGS master	32
Genomic DNA	1
SRA Experiments	2
Protein Sequences	130665
Other datasets
BioSample	32
Assembly	32

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

25
7
32

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_002256225.1	NKJA00000000	SAMN07280667	PA1	Alphaproteobacteria bacterium PA1
GCA_002256425.1	NKIZ00000000	SAMN07280668	PA2	Alphaproteobacteria bacterium PA2
GCA_002256275.1	NKIV00000000	SAMN07280672	PA3	Alphaproteobacteria bacterium PA3
GCA_002256005.1	NKIQ00000000	SAMN07280677	PA4	Alphaproteobacteria bacterium PA4
GCA_002256025.1	NKIB00000000	SAMN07280877	BG1	Asterionella formosa
GCA_002256395.1	NKJG00000000	SAMN07280661	B1	Bacteroidetes bacterium B1(2017)
GCA_002256345.1	NKIY00000000	SAMN07280669	PARB1	Bradyrhizobiaceae bacterium PARB1
GCA_002256335.1	NKIX00000000	SAMN07280670	PARBB1	Bradyrhizobium sp. PARBB1
GCA_002255905.1	NKIN00000000	SAMN07280680	PBB1	Burkholderiales bacterium PBB1
GCA_002255955.1	NKIM00000000	SAMN07280681	PBB2	Burkholderiales bacterium PBB2
GCA_002256115.1	NKIK00000000	SAMN07280683	PBB3	Burkholderiales bacterium PBB3
GCA_002256095.1	NKIJ00000000	SAMN07280684	PBB4	Burkholderiales bacterium PBB4
GCA_002256085.1	NKII00000000	SAMN07280685	PBB5	Burkholderiales bacterium PBB5
GCA_002255925.1	NKIH00000000	SAMN07280686	PBB6	Burkholderiales bacterium PBB6
GCA_002256435.1	NKJC00000000	SAMN07280665	BSSC1	Chitinophagaceae bacterium BSSC1
GCA_002256145.1	NKIP00000000	SAMN07280678	PBBC1	Comamonadaceae bacterium PBBC1
GCA_002255935.1	NKIO00000000	SAMN07280679	PBBC2	Comamonadaceae bacterium PBBC2
GCA_002256295.1	NKJF00000000	SAMN07280662	BCCC1	Cytophagaceae bacterium BCCC1
GCA_002256285.1	NKJE00000000	SAMN07280663	BFFFF1	Flavobacterium sp. BFFFF1
GCA_002256385.1	NKJD00000000	SAMN07280664	BFFFF2	Flavobacterium sp. BFFFF2
GCA_002278815.1	NKIS00000000	SAMN07280675	PASSN1	Novosphingobium sp. PASSN1
GCA_002255865.1	NKIG00000000	SAMN07280687	PGPPP1	Pseudomonas sp. PGPPP1
GCA_002255825.1	NKIF00000000	SAMN07280688	PGPPP2	Pseudomonas sp. PGPPP2
GCA_002256055.1	NKIE00000000	SAMN07280689	PGPPP3	Pseudomonas sp. PGPPP3
GCA_002256045.1	NKID00000000	SAMN07280690	PGPPP4	Pseudomonas sp. PGPPP4
GCA_002256245.1	NKIU00000000	SAMN07280673	PARRP1	Pseudorhodobacter sp. PARRP1
GCA_002256165.1	NKIL00000000	SAMN07280682	PBBBR1	Ralstonia sp. PBBBR1
GCA_002256205.1	NKIW00000000	SAMN07280671	PAR1	Rhizobiales bacterium PAR1
GCA_002256185.1	NKIT00000000	SAMN07280674	PARR1	Rhodobacteraceae bacterium PARR1
GCA_002255985.1	NKIR00000000	SAMN07280676	PASS1	Sphingomonadaceae bacterium PASS1
GCA_002256265.1	NKJB00000000	SAMN07280666	VVV1	Verrucomicrobiales bacterium VVV1
GCA_002255815.1	NKIC00000000	SAMN07190239	-	algae metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	156
Data volume, Mbytes	72000

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Asterionella formosa isolate:BG1

Asterionella formosa and associated bacteria Genome sequencing

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