Conserved Protein Domain Family
PFM_aerolysin-like

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cd20240: PFM_aerolysin-like 
pore-forming module of aerolysin-type beta-barrel pore-forming proteins; uncharacterized subgroup
Generally, pore-forming proteins (PFPs) are secreted as water-soluble monomers, which upon binding to target lipid membranes, oligomerize and form transmembrane pores detrimental to cells. Beta-PFPs form pores by transmembrane beta-barrels. Aerolysin-type beta-PFPs are believed to use an amphipathic beta-hairpin to form the beta-barrel. Many of this family are bacterial toxins. A significant portion of the monomeric subunit structure is re-organized to form the pore. Oligomers formed by members of the aerolysin family include: hepta- (aerolysin), octa- (Dln1), and nonameric oligomers (lysenin and monalysin).
Statistics
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PSSM-Id: 380810
Aligned: 30 rows
Threshold Bit Score: 113.127
Created: 18-Mar-2019
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative membrane-spanning region [structural motif]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                        ###################       #############       ##
WP_079583716 283 VEQLPDFIATWqSTNN-TSVAQQTTTSFNETASKTSSFSNNMGVSVQVSAK-------FNCGIPCIVGGEIstt--ltGS 352 Bacteroidales b...
EKU88909     213 INRRDQFIMGS-IFPG-EPFDVEHTLTVSETARESSTFNETNGVSTQNQSAfhwssqsGQAPLPVVSISGDlst-sitSS 289 Bacteroides ole...
WP_078782981 232 IIESKSIILKQgNVENnTTQEMKRNLPFSESLISTNSFVERMGGILIAKTGsl----dIETKLPKVILSGGvptfgysET 307 Elizabethkingia...
SPW26581     233 ITESKSIVLKRgTVKNdTSQEVKQNLVFSETLIGANSFIERMGGILITKTGnl----eVETGLPKVIISNGvtsfgnnEI 308 Elizabethkingia...
WP_078720170 249 TEESLTSLSKG-TVVNgGSQPLQRTLELSESVSNESSFTETNGVSTKITANa-----sVGLKFKIVEIGTSfti-etaKE 321 Elizabethkingia...
CDA77683     260 LSNTPDMIFSD-KFTNnGPIDQNHTFTISDSYRETSSFNKRTSYSVNVTTK-------FKVKVPFIANGEIsts--vsEG 329 Bacteroides sp....
WP_027471056 214 LSNVPLQVYKE-GYTNnGPIEQTYTFAVNKSYTQSSDFKRSTSYKVSLSTT-------VETGVPFIAKGEIsas--teFG 283 Saccharicrinis ...
RGS44829     174 LNKVPNVLYSE-KYTNkGPIAQTYSFKVQESYSKSSSFNKKTSYNVSVSTE-------IKTRVPFIAEGKItts--vsGG 243 Prevotella copri
WP_009013351 256 LTQEPELVYSDrFVNN-SPIEQKHTFSISKTYKETSSFTKKTSYSLSIKTD-------FSVKIPIIADGKIstt--lsSS 325 Prevotella sp. ...
WP_032565833 248 LKEMPDIVFVD-RYINkGPIEQTHKFVISETYKETSNFSRKTSYDVKVSAT-------TKVKVPLVASAEInvs--teFG 317 Bacteroides fra...
Feature 1        ##########                                                                    
WP_079583716 353 YSRTWGESTTttdTRNYNFPVTIPphsrVEATARVTRHKMNvrytaylknp---stgkqlrinGIWEGVDCTDIETSY 427 Bacteroidales bac...
EKU88909     290 HSTNYTSTGEydvTVSQTFKVVIPanttCRVEVLKMSYNTTltyvvtlekangaeagkrfrikGKWEGIVTTFLYYNI 367 Bacteroides oleic...
WP_078782981 308 AKLNYNIKSPvttTFQLNPDITIPsrtiLNYKVTVLQHSLRlkytarcsgv---ksgkvinisGVYSGFDYSDPSLET 382 Elizabethkingia m...
SPW26581     309 TKLKYSTNSPlttTIQLNIDNSISpkttLNYKITVIQYQFRlkytalcrgv---ksgkiinisGVYNGTSYSNPSLEI 383 Elizabethkingia m...
WP_078720170 322 RTVQYGANKTitrTITNAFNLTVPpntiSTFNFQARQHKVRvnytarcrgi---rtgkvitisGVYTGIEYSSTIMEV 396 Elizabethkingia a...
CDA77683     330 QDFTYGETEEhsfSINRTYPITVPsnytAQMTLTLSKYTMDveycavcvgt---vsgrkinirGIWKGVDVQESDAYL 404 Bacteroides sp. C...
WP_027471056 284 QEFTYGESESttiAVNRSYPVKVPanyrADLSLTFIKYNMDvdyiatcrgl---tsgkiieikGVWSGVDVEETDANL 358 Saccharicrinis fe...
RGS44829     244 QEFTYGKTEAktvTISREYPVSVPanytAQLSVVFYKYNMDvdyvatcvgv---tsgrrikikGKWSGVDAQFVDAVL 318 Prevotella copri
WP_009013351 326 KEFTYGKSEEhtiTINRDYPIIIPanyiGIMRVTLYKYNMDveyiatcvgm---vsgrkikikGRWKGVDVEQTEAVL 400 Prevotella sp. C561
WP_032565833 318 QEFVYGESDEhtiAINREYPVVVPanykAELKLVLLKYNMDveyvatcrgv---tsgkkleikGRWTGVDVVETEAST 392 Bacteroides fragilis

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