Conserved Protein Domain Family
Retrotrans_gag

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pfam03732: Retrotrans_gag 
Retrotransposon gag protein
Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Statistics
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PSSM-Id: 367628
Aligned: 55 rows
Threshold Bit Score: 61.194
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9FGL3  131 SMV--------KSWILNSVTKQIYKsilr-fndaAEIWKDLDTRFHITNLP--RSYQLTQQIWSLQQGNMSLSDYYTTLK 199  thale cress
Q9UVC2   52 IFAttflrgraQHWVKPFLRKYLDSngednadgvFKSYNHLKHAMKSVFGVsnEIATAVRVIQHLTQ-KTSTAEYAAKFQ 130  Passalora fulva
Q7TN75  174 CFVtsmligraARWATAKLQRCTYL---------MHNYTAFMMELKHVFEDpqRREAAKRKIRRLRQGPGPVVDYSNAFQ 244  house mouse
O93283  149 GFItslladkaLSWAIAAVDLDPRL---------SSDYSAFRREFKAVFEHptYGEDAASRLLALQQGSRSVAEYTLEFR 219  torafugu
Q98SV9  117 AFVvnllsgraAQWATAVLENQTPA---------SSSFPEFTAELKRVFDHpiQSGEAASQIRSLRQGSSSVADY---FR 184  torafugu
Q9C7H8  150 KMVaihfdshaATWHHSFIQSGIGLd-------vFFNWPEYVKLLKDRFEDa-CDDPMAE-LKKLQE-TDGIVEYHQQFE 219  thale cress
Q9FYC9  102 DIAsihfddidATWHQSIVQSIMWRh-------vRHDWWNYKLLLQVRYNK--HVDDSIAKLKLLQE-TEGIEVYHARFE 171  thale cress
Q9SX87  132 SIAstlcdgaaAKWYKSLFESDFGVk-------lLSNWNMYKLLLEEHFAE--VLDDPISELKQLKE-TNGIEEYHKKFE 201  thale cress
Q9LP90  163 ALVsvsvsgeaLSWYNWAISRGDFV-----------SWLKLKSGLMLRFGNlkLRGPSQS-LFCIKQ-TGSVAEYVQRFE 229  thale cress
Q9FWC7  155 SAVvlhmsgnaAQWYHSYKLVNEVN-----------SWDQFRMAVATEFEGv-VEREKMSALDTLTQ-TGTVTEYKQQFD 221  Japanese rice
Q9FGL3  200 TLWDDLDgascVNTCrnckccsatasvneHSKIVKFLAGLND 241  thale cress
Q9UVC2  131 EYAQLTD-----WDD--------------EALQVMYRRGLKE 153  Passalora fulva
Q7TN75  245 MIAQDLD-----WTE--------------PALMDQFQEGLNP 267  house mouse
O93283  220 ILAAESR-----WGE--------------TALRSAYRRGLSE 242  torafugu
Q98SV9  185 ILAARSG-----WND--------------TALRGVFTQGLAE 207  torafugu
Q9C7H8  220 LIKVRLN-----LSE--------------EYLVSVYLAGLRT 242  thale cress
Q9FYC9  172 SICTRVK-----LDE--------------DFLVSLYLTGLKT 194  thale cress
Q9SX87  202 LLRARVN-----LSE--------------DYLVRVYLDGLHP 224  thale cress
Q9LP90  230 DLSSQVG----GLDD--------------QKLEGIFLNGLTG 253  thale cress
Q9FWC7  222 YLVYQIR----VFDPsv----------ggKMLVTRFMNGLTE 249  Japanese rice
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