Conserved Protein Domain Family
PFM_spherulin-2a-like

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cd20235: PFM_spherulin-2a-like 
pore-forming module of Physarum polycephalum spherulin-2a, Plodia interpunctella follicular epithelium yolk protein subunit YP4, and similar aerolysin-type beta-barrel pore-forming proteins
Spherulin 2a is a coat glycoprotein produced during encystment from the slime mold, Physarum polycephalum. YP4, is one of two subunits of the follicular epithelium yolk protein from Plodia interpunctella and other pyralid moths; it is produced in the follicle cells during vitellogenesis, and after secretion it is taken up into the oocyte and stored in the yolk spheres for utilization during embryogenesis. Members of this group belong to the aerolysin family of beta-pore-forming proteins (beta-PFPs). PFPs are generally secreted as water-soluble monomers, which upon binding to target lipid membranes, oligomerize and form transmembrane pores harmful to cells. Beta-PFPs form pores by transmembrane beta-barrels. Aerolysin-type beta-PFPs are believed to use an amphipathic beta-hairpin to form the beta-barrel, are found in all kingdoms of life and many are bacterial toxins. In addition to having a role in microbial infection, they have potential as biotechnological sensors and delivery systems. They share a similar monomeric architecture, with a variable membrane-binding domain and a structurally conserved pore-forming region. A significant portion of the monomeric subunit structure is re-organized to form the pore. Oligomers formed by members of the aerolysin family include: hepta- (aerolysin), octa- (Dln1), and nonameric oligomers (lysenin and monalysin).
Statistics
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PSSM-Id: 380805
Aligned: 74 rows
Threshold Bit Score: 116.936
Created: 18-Dec-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative membrane-spanning region [structural motif]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       #####      ###########      #####################
WP_042859453  96 PVIVMEQDFVNNSsvPAVYNVKISQSVQNTVKSSWNtggkltVGQKVKYGISFlgtgggGESSISYEQSWGIGGEQSTTI 175 Dickeya sp. NCP...
OXA37080     114 RSVIATNDYDNESnqNVTIREILSHVIYDPVETTWSgevglsASHDFNIDVLFm----kGSASLSFTTKIGYSNKKTSAS 189 Folsomia candida
OXA54385     502 TSVIASNDYTNESelNVTIKETLSHTIYDSVETTWSge--vgLAASFDFSVNVff--vkGSASLDLTTKFGYAKTETKSS 577 Folsomia candida
KPJ02035     114 MKTIISKNFVNTEtkPTTFNIGLKKHLENTVSSFWTkdgdltINKGINYAIYL------GNETITYTSLWGLNTEKSVTT 187 Asian swallowtail
XP_022127885 107 NQTVTKQQYTNKTssNVTFWGNISRSVDEEVTINWYnpkkiyINGNVSHHFEFtq---iGGKDFHLTAPWGIDTEEVNXE 183 cabbage white
XP_028027682 107 RKSLKERFYYNTNvnKVNFSVSICEKVENSFRVSWNgp--vgIEGIINYDIRLat--qnRASSFKFNASFGQDSQFTVPI 182 wild silkworm
XP_028027737 108 KMVVLSQQFYNNQgnSTVFSVKIEDKIENNVASKWTkaqeltVNDYITYDIKLd-----DFPRILFIANYNQNAKKYEIV 182 wild silkworm
XP_013178385 106 NIIIKNQECINNTtrNIKKNISIYEIIEDTVRSFWYkn--glPEESILYNMSYn----fHGQIKSFENQWRKNNFHSVSL 179 Asian swallowtail
XP_026317319 113 YAVLNVHEHINTAssSINYTAAVFQTVENTILSFWSky--glPEDDIFYDIGVs----fYNKIFNYENKWRNDSIRTVNS 186 Hyposmocoma kah...
XP_011556135 111 PVQVTVQEFINNTtkPIKRNIGIYKTVESTVFSTWSkt--gfPVDNITYGVKVsy--rnSNKTFEYENLWRSTLVRNQMV 186 diamondback moth
Feature 1        ##                                                                         
WP_042859453 176 TLg----tESGLQVTLQPGQAVTAELVASRGSmkvqvdyqaslsgis-avnynptykdhhfwGLPITQIMRSSNI 245 Dickeya sp. NCPPB 3274
OXA37080     190 TVg----sSTEVELVLRPKSSVTVEIVSKTAYsspavlwcpwhhdv--aydvslnsqshgptLALSDDLAADRAD 258 Folsomia candida
OXA54385     578 TMg----sGTEVELTLRPKSSVTVEIVSKIGEgvatmrykamlegsv-atkynrkyknhhywSIAVTRVLRALGK 647 Folsomia candida
KPJ02035     188 VFg-----SDNVQLTLLPGQSVTTELRAMKLNlaiemeyttsltgsv-atnymdgykdhhywALDVDELMSTNNL 256 Asian swallowtail
XP_022127885 184 VNpieigsEYRFKEILNPNETLEVEVQTIKANieievvyestlsgnv-vvnyknklmghhfwSVEVTDVLSIIGM 257 cabbage white
XP_028027682 183 TLg----hGFCANVTLVPGQLARAELTVDITTvgiqiayeaylsgvv-alaydrphnghhfwAPNIDHVLYTCGQ 252 wild silkworm
XP_028027737 183 KI------DANIDVHLEPNQHIKAELAANITTveviidyeahltglt-avnyvrkydnhhfwGLDINTVMAAGRL 250 wild silkworm
XP_013178385 180 PFg----iKKDGYINIKPGGKATIRLKGKKMIilievlylanlignv-vvnyahlygkyhfwAPTVNDIMKANNI 249 Asian swallowtail
XP_026317319 187 AFg----iKKEGFAEIMPGQTILSKLTGLKTIilieieytakligni-iadyealygkyhfySPTIAKIMKAANL 256 Hyposmocoma kahamanoa
XP_011556135 187 RFg----aSKPGYVKVEPGQKLRTTLNGFKTIvlvevtykasvignvigdfeelegihyhffAPTVRNIMKAADI 257 diamondback moth

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