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Zfp996l1 zinc finger protein 996 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102548714, updated on 17-Aug-2024

Summary

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Official Symbol
Zfp996l1provided by RGD
Official Full Name
zinc finger protein 996 like 1provided by RGD
Primary source
RGD:7616489
See related
AllianceGenome:RGD:7616489
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Zfp996l
Expression
Biased expression in Testes (RPKM 6.4), Thymus (RPKM 4.9) and 8 other tissues See more
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Genomic context

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See Zfp996l1 in Genome Data Viewer
Location:
14p22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (5363911..5377517, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (5057319..5072903, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (6382442..6395315, complement)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 866 like 1 Neighboring gene zinc finger protein 951 Neighboring gene zinc finger protein 996 like 2 Neighboring gene zinc finger protein 951 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
zinc finger protein 431-like
Names
zinc finger protein 709-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    5363911..5377517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008770123.4 → XP_008768345.3  zinc finger protein 431-like isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:100 → 409
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:373 → 393
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:427 → 449
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:12 → 52
    KRAB; KRAB box

  2. XM_039092640.2 → XP_038948568.1  zinc finger protein 431-like isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:111 → 420
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:384 → 404
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:438 → 460
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:23 → 63
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

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