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Tsen2-ps1 tRNA splicing endonuclease subunit 2, pseudogene 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102555914, updated on 17-Aug-2024

Summary

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Official Symbol
Tsen2-ps1provided by RGD
Official Full Name
tRNA splicing endonuclease subunit 2, pseudogene 1provided by RGD
Primary source
RGD:7574102
See related
AllianceGenome:RGD:7574102
Gene type
pseudo
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 30.9), Lung (RPKM 28.1) and 9 other tissues See more
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Genomic context

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See Tsen2-ps1 in Genome Data Viewer
Location:
9q38
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (118546256..118552178)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (111099648..111105546)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (119533519..119538913)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555849 Neighboring gene U6 spliceosomal RNA Neighboring gene lipin 2 Neighboring gene U7 small nuclear RNA Neighboring gene elastin microfibril interfacer 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Other Names

  • tRNA-splicing endonuclease subunit Sen2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    118546256..118552178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
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