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Zfp1007l2 zinc finger protein 1007 like 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102556098, updated on 4-Jan-2025

Summary

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Official Symbol
Zfp1007l2provided by RGD
Official Full Name
zinc finger protein 1007 like 2provided by RGD
Primary source
RGD:7732163
See related
EnsemblRapid:ENSRNOG00000070917 AllianceGenome:RGD:7732163
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Zfp1007l
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Zfp1007l2 in Genome Data Viewer
Location:
1p13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (1790377..1809014)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (650108..668745, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (249306..269871, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 2 receptor, pseudogene 4 Neighboring gene vomeronasal 2 receptor, pseudogene 5 Neighboring gene zinc finger protein 748, pseudogene 3 Neighboring gene vomeronasal 2 receptor, pseudogene 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 431-like
Names
zinc finger protein 729-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    1790377..1809014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063280778.1 → XP_063136848.1  zinc finger protein 431-like isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y7I7

  2. XM_039098347.1 → XP_038954275.1  zinc finger protein 431-like isoform X2

    UniProtKB/TrEMBL
    A0A8I6AE01
    Related
    ENSRNOP00000092602.1, ENSRNOT00000110441.2
    Conserved Domains (4) summary
    COG5048
    Location:157 → 533
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:385 → 405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box
    pfam13465
    Location:565 → 589
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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