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LOC102558068 sperm acrosome membrane-associated protein 3 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102558068, updated on 8-May-2024

Summary

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Gene symbol
LOC102558068
Gene description
sperm acrosome membrane-associated protein 3
Locus tag
Y1Q_0014973
See related
EnsemblRapid:ENSAMIG00015004068
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
ASCL5
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Genomic context

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See LOC102558068 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 14 NC_081837.1 (32842684..32845796)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711201.1 (3275722..3279658, complement)

Chromosome 14 - NC_081837.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 9 Neighboring gene achaete-scute family bHLH transcription factor 5 Neighboring gene leucine zipper like post translational regulator 1 Neighboring gene importin 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysozyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fusion of sperm to egg plasma membrane involved in single fertilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in acrosomal vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sperm flagellum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysozyme-like protein 6; sperm acrosome membrane-associated protein 3
Names
achaete-scute-like protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081837.1 Reference rAllMis1 Primary Assembly

    Range
    32842684..32845796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006277987.3 → XP_006278049.2  sperm acrosome membrane-associated protein 3 isoform X2

    Related
    ENSAMIP00015004879.1, ENSAMIT00015007352.1

  2. XM_019492476.2 → XP_019348021.2  lysozyme-like protein 6 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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