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SYPL2 synaptophysin like 2 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102576588, updated on 8-May-2024

Summary

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Gene symbol
SYPL2
Gene description
synaptophysin like 2
Locus tag
Y1Q_0014950
See related
EnsemblRapid:ENSAMIG00015003972
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See SYPL2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 14 NC_081837.1 (34165332..34183887)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711201.1 (2289805..2308311, complement)

Chromosome 14 - NC_081837.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109284349 Neighboring gene proteasome 20S subunit alpha 5 Neighboring gene ataxin 7 like 2 Neighboring gene probable transmembrane reductase CYB561D1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptophysin-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081837.1 Reference rAllMis1 Primary Assembly

    Range
    34165332..34183887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006260047.4 → XP_006260109.1  synaptophysin-like protein 2

    UniProtKB/TrEMBL
    A0A151N8L8
    Related
    ENSAMIP00015004787.1, ENSAMIT00015007216.1
    Conserved Domains (1) summary
    pfam01284
    Location:30 → 232
    MARVEL; Membrane-associating domain
Nucleotide Protein
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Gene LinkOut

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