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AMIGO1 adhesion molecule with Ig like domain 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102577273, updated on 8-May-2024

Summary

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Gene symbol
AMIGO1
Gene description
adhesion molecule with Ig like domain 1
Locus tag
Y1Q_0014947
See related
EnsemblRapid:ENSAMIG00015003990
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See AMIGO1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 14 NC_081837.1 (34226165..34234042, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711201.1 (2239923..2248918)

Chromosome 14 - NC_081837.1Genomic Context describing neighboring genes Neighboring gene ataxin 7 like 2 Neighboring gene probable transmembrane reductase CYB561D1 Neighboring gene U1 spliceosomal RNA Neighboring gene G protein-coupled receptor 61

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amphoterin-induced protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081837.1 Reference rAllMis1 Primary Assembly

    Range
    34226165..34234042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019492569.2 → XP_019348114.1  amphoterin-induced protein 1

    UniProtKB/TrEMBL
    A0A151N8S2
    Related
    ENSAMIP00015004793.1, ENSAMIT00015007235.1
Nucleotide Protein
Heading Accession and Version

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