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LOC105379340 uncharacterized LOC105379340 [ Homo sapiens (human) ]

Gene ID: 105379340, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105379340
Gene description
uncharacterized LOC105379340
See related
Ensembl:ENSG00000253888
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward kidney (RPKM 1.8) See more
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Genomic context

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See LOC105379340 in Genome Data Viewer
Location:
8p21.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (27171589..27210783)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (27448433..27488200)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene nuclear pore associated protein 1 pseudogene Neighboring gene microRNA 548h-4 Neighboring gene MPRA-validated peak6966 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:27093978-27094478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:27094479-27094979 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:27099673-27100624 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:27132319-27132821 Neighboring gene stathmin 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27134 Neighboring gene tripartite motif containing 35 Neighboring gene protein tyrosine kinase 2 beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    27171589..27210783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_949607.3 RNA Sequence

    Related
    ENST00000521408.3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    27448433..27488200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078828.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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