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NKX6-1 NK6 homeobox 1 [ Phasianus colchicus (ring-necked pheasant) ]

Gene ID: 116231281, updated on 27-Jul-2024

Summary

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Gene symbol
NKX6-1
Gene description
NK6 homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Phasianus colchicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Phasianus
Orthologs
human mouse all
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Genomic context

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See NKX6-1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM414374v1 (GCF_004143745.1) Unplaced Scaffold NW_022205396.1 (2685249..2695275, complement)

NW_022205396.1Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate acyltransferase 3-like Neighboring gene glycerol-3-phosphate acyltransferase 3 Neighboring gene uncharacterized LOC116231123 Neighboring gene CDP-diacylglycerol synthase 1 Neighboring gene WD repeat and FYVE domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022205396 Unplaced Scaffold Reference ASM414374v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Nkx-6.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phasianus colchicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM414374v1 Primary Assembly

Genomic

  1. NW_022205396.1 Reference ASM414374v1 Primary Assembly

    Range
    2685249..2695275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031596962.1 → XP_031452822.1  homeobox protein Nkx-6.1

    Conserved Domains (1) summary
    pfam00046
    Location:204 → 258
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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