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Pate4b prostate and testis expressed 4B [ Rattus norvegicus (Norway rat) ]

Gene ID: 120094107, updated on 27-Nov-2024

Summary

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Official Symbol
Pate4bprovided by RGD
Official Full Name
prostate and testis expressed 4Bprovided by RGD
Primary source
RGD:41308095
See related
EnsemblRapid:ENSRNOG00000080692
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Svs7; Pate4; Pate4a
Orthologs
human mouse all
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Genomic context

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See Pate4b in Genome Data Viewer
Location:
8q21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (42246492..42249233, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (33988810..33991551, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 25 Neighboring gene pseudouridine synthase 3 Neighboring gene HYLS1, centriolar and ciliogenesis associated Neighboring gene prostate and testis expressed 2 Neighboring gene prostate and testis expressed 3 Neighboring gene prostate and testis expressed 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR proteins that are expressed in reproductive and neuron-rich tissues and possess neuromodulatory activity. Levitin F, et al. J Biol Chem, 2008 Jun 13. PMID 18387948, Free PMC Article
  2. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
prostate and testis expressed 4
Names
prostate and testis expressed 4A
prostate and testis expressed protein 4
seminal vesicle protein, secretion 7
seminal vesicle secretory protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402191.1 → NP_001389120.1  prostate and testis expressed 4 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    A6JYL1, D4AE27
    Related
    ENSRNOP00000093200.1, ENSRNOT00000112259.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    42246492..42249233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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