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LOC120099272 high mobility group protein B4-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 120099272, updated on 4-Jan-2025

Summary

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Symbol
LOC120099272provided by RGD
Full Name
high mobility group protein B4-likeprovided by RGD
Primary source
RGD:41204737
See related
EnsemblRapid:ENSRNOG00000082635 AllianceGenome:RGD:41204737
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA binding activity, bending. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See LOC120099272 in Genome Data Viewer
Location:
Xq36
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (133746324..133747040, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (128868498..128869190, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene ecto-NOX disulfide-thiol exchanger 2 Neighboring gene eukaryotic translation initiation factor 4B-like Neighboring gene Rho GTPase activating protein 36 Neighboring gene olfactory receptor family 11 subfamily Q member 2 Neighboring gene olfactory receptor family 5 subfamily O member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding, bending IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
high mobility group protein B4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    133746324..133747040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100378.2 → XP_038956306.1  high mobility group protein B4-like

    UniProtKB/TrEMBL
    A0A8I6A1Q7, A0A8I6A6Y4
    Related
    ENSRNOP00000112152.1, ENSRNOT00000168850.1
    Conserved Domains (1) summary
    cd01390
    Location:95 → 158
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
Nucleotide Protein Strain
Heading Accession and Version

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