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LOC120102832 RNA-binding protein 12B-A-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 120102832, updated on 9-Dec-2024

Summary

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Symbol
LOC120102832provided by RGD
Full Name
RNA-binding protein 12B-A-likeprovided by RGD
Primary source
RGD:41100894
See related
EnsemblRapid:ENSRNOG00000055292 AllianceGenome:RGD:41100894
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human RBM12B (RNA binding motif protein 12B). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See LOC120102832 in Genome Data Viewer
Location:
5q13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (30387799..30394605)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (25590500..25597273)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134478935 Neighboring gene transmembrane protein 67 Neighboring gene RNA binding motif protein 12B Neighboring gene CBY1 interacting BAR domain containing 1 Neighboring gene uncharacterized LOC120102833 Neighboring gene triple QxxK/R motif containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
RNA-binding protein 12B-A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    30387799..30394605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063261261.1 → XP_063117331.1  RNA-binding protein 12B-A-like

    UniProtKB/TrEMBL
    A0A8I6ADB2

  2. XM_039110938.1 → XP_038966866.1  RNA-binding protein 12B-A-like

    UniProtKB/TrEMBL
    A0A8I6ADB2
    Related
    ENSRNOP00000106384.1, ENSRNOT00000128493.1
    Conserved Domains (5) summary
    PTZ00465
    Location:619 → 703
    PTZ00465; rhoptry-associated protein 1 (RAP-1); Provisional
    COG0724
    Location:367 → 581
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12746
    Location:152 → 237
    RRM2_RBM12B; RNA recognition motif 2 (RRM2) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12748
    Location:401 → 476
    RRM4_RBM12B; RNA recognition motif 4 (RRM4) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:2 → 80
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_039110936.2 → XP_038966864.1  RNA-binding protein 12B-A-like

    UniProtKB/TrEMBL
    A0A8I6ADB2
    Related
    ENSRNOP00000107293.1, ENSRNOT00000122529.1
    Conserved Domains (5) summary
    PTZ00465
    Location:619 → 703
    PTZ00465; rhoptry-associated protein 1 (RAP-1); Provisional
    COG0724
    Location:367 → 581
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12746
    Location:152 → 237
    RRM2_RBM12B; RNA recognition motif 2 (RRM2) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12748
    Location:401 → 476
    RRM4_RBM12B; RNA recognition motif 4 (RRM4) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:2 → 80
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_039110937.2 → XP_038966865.1  RNA-binding protein 12B-A-like

    UniProtKB/TrEMBL
    A0A8I6ADB2
    Conserved Domains (5) summary
    PTZ00465
    Location:619 → 703
    PTZ00465; rhoptry-associated protein 1 (RAP-1); Provisional
    COG0724
    Location:367 → 581
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12746
    Location:152 → 237
    RRM2_RBM12B; RNA recognition motif 2 (RRM2) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cd12748
    Location:401 → 476
    RRM4_RBM12B; RNA recognition motif 4 (RRM4) found in RNA-binding protein 12B (RBM12B) and similar proteins
    cl17169
    Location:2 → 80
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein Strain
Heading Accession and Version

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