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FOXA1 forkhead box A1 [ Desmodus rotundus (common vampire bat) ]

Gene ID: 123478729, updated on 3-Dec-2024

Summary

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Gene symbol
FOXA1
Gene description
forkhead box A1
Gene type
protein coding
RefSeq status
MODEL
Organism
Desmodus rotundus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Desmodontinae; Desmodus
Orthologs
human mouse all
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Genomic context

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See FOXA1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current HLdesRot8A (GCF_022682495.1) 7 NC_071393.1 (50053435..50109348)
101 previous assembly ASM294091v2 (GCF_002940915.1) Unplaced Scaffold NW_020090542.1 (4005921..4016968)

Chromosome 7 - NC_071393.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 6 Neighboring gene U2 spliceosomal RNA Neighboring gene vacuolar protein sorting-associated protein 72 homolog Neighboring gene uncharacterized LOC112296511 Neighboring gene ferritin light chain-like Neighboring gene mirror-image polydactyly 1 Neighboring gene 40S ribosomal protein S8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 3-alpha
Names
Putative forkhead/hnf-3-related transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022682495.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HLdesRot8A Primary Assembly

Genomic

  1. NC_071393.1 Reference HLdesRot8A Primary Assembly

    Range
    50053435..50109348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053927695.1 → XP_053783670.1  hepatocyte nuclear factor 3-alpha isoform X1

    UniProtKB/TrEMBL
    K9IKD8

  2. XM_053927698.1 → XP_053783673.1  hepatocyte nuclear factor 3-alpha isoform X4

    UniProtKB/TrEMBL
    K9IKD8

  3. XM_053927696.1 → XP_053783671.1  hepatocyte nuclear factor 3-alpha isoform X2

    UniProtKB/TrEMBL
    K9IKD8

  4. XM_053927697.1 → XP_053783672.1  hepatocyte nuclear factor 3-alpha isoform X3

    UniProtKB/TrEMBL
    K9IKD8, K9IXZ8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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