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PCHILR prostate cancer associated HIP1 interacting lncRNA [ Homo sapiens (human) ]

Gene ID: 129810500, updated on 28-Oct-2024

Summary

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Official Symbol
PCHILRprovided by HGNC
Official Full Name
prostate cancer associated HIP1 interacting lncRNAprovided by HGNC
Primary source
HGNC:HGNC:55418
See related
Ensembl:ENSG00000260884 AllianceGenome:HGNC:55418
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCLN16
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Genomic context

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See PCHILR in Genome Data Viewer
Location:
16q23.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (74313337..74315640)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (80131121..80133424)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (74347235..74349538)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene 49 Neighboring gene H3K27ac hESC enhancers GRCh37_chr16:74329945-74330836 and GRCh37_chr16:74330837-74331726 Neighboring gene proteasome 26S subunit, non-ATPase 7 Neighboring gene ribosomal protein L21 pseudogene 118 Neighboring gene pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:74390671-74391172 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:74402112-74402363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11107 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:74414879-74415096 Neighboring gene nuclear pore complex interacting protein family member B15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel long non-coding RNA PCLN16 facilitates androgen receptor signaling in prostate cancer. Shi Z, et al. Biochem Biophys Res Commun, 2021 Jan 22. PMID 33387886

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A novel long non-coding RNA PCLN16 facilitates androgen receptor signaling in prostate cancer.
    Title: A novel long non-coding RNA PCLN16 facilitates androgen receptor signaling in prostate cancer.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • prostate cancer lncRNA at chromosome 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186416.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009120
    Related
    ENST00000564455.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    74313337..74315640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    80131121..80133424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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