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PHSY_007512 hypothetical protein [ Pseudozyma hubeiensis SY62 ]

Gene ID: 24112775, updated on 9-Nov-2023

Summary

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Gene symbol
PHSY_007512
Gene description
hypothetical protein
Locus tag
PHSY_007512
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Pseudozyma hubeiensis SY62 (strain: SY62)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; mitosporic Ustilaginaceae; Pseudozyma
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Genomic context

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See PHSY_007512 in Genome Data Viewer
Exon count:
1

NW_012133852.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 2 Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene thioredoxin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012133852.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Draft Genome Sequence of the Basidiomycetous Yeast-Like Fungus Pseudozyma hubeiensis SY62, Which Produces an Abundant Amount of the Biosurfactant Mannosylerythritol Lipids. Konishi M, et al. Genome Announc, 2013 Jun 27. PMID 23814110, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble position uridine thiolation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic tRNA wobble base thiouridylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_012133852.1 Reference assembly

    Range
    311523..312740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012338106.1 → XP_012193496.1  hypothetical protein PHSY_007512 [Pseudozyma hubeiensis SY62]

    See identical proteins and their annotated locations for XP_012193496.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    R9PEW3
    Conserved Domains (3) summary
    TIGR00269
    Location:226 → 330
    TIGR00269; TIGR00269 family protein
    COG0037
    Location:29 → 332
    TilS; tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]
    cd01993
    Location:53 → 262
    Alpha_ANH_like_II; This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily ...
Nucleotide Protein
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