U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Zscan30 zinc finger and SCAN domain containing 30 [ Rattus norvegicus (Norway rat) ]

Gene ID: 364827, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Symbol
Zscan30provided by RGD
Full Name
zinc finger and SCAN domain containing 30provided by RGD
Primary source
RGD:1306095
See related
EnsemblRapid:ENSRNOG00000030131 AllianceGenome:RGD:1306095
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Znf397; Zfp397os; Znf397os; Zpf397os; AABR07031494.1
Summary
Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZSCAN30 (zinc finger and SCAN domain containing 30). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Thymus (RPKM 60.5), Spleen (RPKM 50.6) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Zscan30 in Genome Data Viewer
Location:
18p12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (15524313..15540983, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (15245140..15266204, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (15866470..15880569, complement)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482920 Neighboring gene zinc finger protein 397 Neighboring gene zinc finger protein 35 Neighboring gene proline-rich nuclear receptor coactivator 1. pseudogene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger and SCAN domain-containing protein 30
Names
zinc finger protein 397 opposite strand

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001400760.1 → NP_001387689.1  zinc finger and SCAN domain-containing protein 30

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000018
    UniProtKB/TrEMBL
    A0A8I6AI83
    Related
    ENSRNOP00000092601.1, ENSRNOT00000120251.2
    Conserved Domains (3) summary
    smart00431
    Location:44 → 153
    SCAN; leucine rich region
    COG5048
    Location:338 → 525
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:453 → 473
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    15524313..15540983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006254478.5 → XP_006254540.1  zinc finger and SCAN domain-containing protein 30 isoform X1

    See identical proteins and their annotated locations for XP_006254540.1

    UniProtKB/TrEMBL
    A0A8I6AI83
    Related
    ENSRNOP00000034947.7, ENSRNOT00000039216.7
    Conserved Domains (3) summary
    smart00431
    Location:44 → 153
    SCAN; leucine rich region
    COG5048
    Location:338 → 525
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:453 → 473
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_063277489.1 → XP_063133559.1  zinc finger and SCAN domain-containing protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AI83

  3. XM_063277488.1 → XP_063133558.1  zinc finger and SCAN domain-containing protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AI83

  4. XM_039097323.2 → XP_038953251.1  zinc finger and SCAN domain-containing protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AI83
    Conserved Domains (3) summary
    smart00431
    Location:44 → 153
    SCAN; leucine rich region
    COG5048
    Location:338 → 525
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:453 → 473
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_063277487.1 → XP_063133557.1  zinc finger and SCAN domain-containing protein 30 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AI83

  6. XM_008772002.4 → XP_008770224.1  zinc finger and SCAN domain-containing protein 30 isoform X2

    See identical proteins and their annotated locations for XP_008770224.1

    Conserved Domains (4) summary
    COG5048
    Location:195 → 382
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:310 → 330
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:168 → 190
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:323 → 347
    zf-H2C2_2; Zinc-finger double domain

  7. XM_063277490.1 → XP_063133560.1  zinc finger and SCAN domain-containing protein 30 isoform X3

  8. XM_039097325.2 → XP_038953253.1  zinc finger and SCAN domain-containing protein 30 isoform X3

    Conserved Domains (1) summary
    cl02605
    Location:44 → 136
    SCAN; SCAN oligomerization domain

RNA

  1. XR_010059591.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.