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Or6c38 olfactory receptor family 6 subfamily C member 38 [ Rattus norvegicus (Norway rat) ]

Gene ID: 366793, updated on 9-Dec-2024

Summary

Official Symbol
Or6c38provided by RGD
Official Full Name
olfactory receptor family 6 subfamily C member 38provided by RGD
Primary source
RGD:1334413
See related
EnsemblRapid:ENSRNOG00000043438 AllianceGenome:RGD:1334413
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Olr879
Summary
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
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Genomic context

See Or6c38 in Genome Data Viewer
Location:
7q11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (2156117..2157055, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (1546316..1547254, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (3706288..3707226, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 6 subfamily C member 63 Neighboring gene olfactory receptor family 6 subfamily C member 8 Neighboring gene olfactory receptor family 6 subfamily C member 2B Neighboring gene olfactory receptor family 6 subfamily C member 201

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables olfactory receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables olfactory receptor activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
olfactory receptor Olr879
Names
olfactory receptor 879
olfactory receptor gene Olr879

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001000586.1NP_001000586.1  olfactory receptor Olr879

    See identical proteins and their annotated locations for NP_001000586.1

    Status: REVIEWED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A6KSL4, D3ZYI7
    Related
    ENSRNOP00000063155.1, ENSRNOT00000064380.3
    Conserved Domains (2) summary
    pfam00001
    Location:39288
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:36303
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    2156117..2157055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)