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Vom1r86 vomeronasal 1 receptor 86 [ Rattus norvegicus (Norway rat) ]

Gene ID: 494247, updated on 4-Jan-2025

Summary

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Symbol
Vom1r86provided by RGD
Full Name
vomeronasal 1 receptor 86provided by RGD
Primary source
RGD:1549696
See related
AllianceGenome:RGD:1549696
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
V1rc42
Summary
Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to act upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in plasma membrane. Orthologous to several human genes including VN1R5 (vomeronasal 1 receptor 5 (gene/pseudogene)). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Vom1r86 in Genome Data Viewer
Location:
4q24
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (88528685..88529593)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (87198525..87199433)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (88271061..88271969)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 84 Neighboring gene vomeronasal 1 receptor 85 Neighboring gene vomeronasal 1 receptor pseudogene 74 Neighboring gene vomeronasal 1 receptor 87

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Haploinsufficiency of SAMD9L, an endosome fusion facilitator, causes myeloid malignancies in mice mimicking human diseases with monosomy 7. Nagamachi A, et al. Cancer Cell, 2013 Sep 9. PMID 24029230
  2. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables pheromone receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within hematopoietic progenitor cell differentiation ISO
Inferred from Sequence Orthology
more info
  
involved_in response to pheromone IEA
Inferred from Electronic Annotation
more info
  
involved_in sensory perception of chemical stimulus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative vomeronasal receptor-like protein 4; vomeronasal 1 receptor 86
Names
vomernasal 1 receptor Vom1r86
vomeronasal 1 receptor, C42
vomeronasal V1r-type receptor V1rc42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    88528685..88529593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039109064.1 → XP_038964992.1  putative vomeronasal receptor-like protein 4

    UniProtKB/TrEMBL
    A0A8I6AJL4, A0A8I6GJZ0
    Conserved Domains (2) summary
    cd14964
    Location:3 → 28
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:2 → 295
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001009527.1: Suppressed sequence

    Description
    NM_001009527.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
Nucleotide Protein Strain
Heading Accession and Version

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