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Ccdc152 coiled-coil domain containing 152 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499536, updated on 4-Jan-2025

Summary

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Official Symbol
Ccdc152provided by RGD
Official Full Name
coiled-coil domain containing 152provided by RGD
Primary source
RGD:1561503
See related
EnsemblRapid:ENSRNOG00000039473 AllianceGenome:RGD:1561503
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561503
Summary
Orthologous to human CCDC152 (coiled-coil domain containing 152). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Liver (RPKM 8915.4), Kidney (RPKM 5291.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc152 in Genome Data Viewer
Location:
2q16
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (54236013..54260531, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (52507987..52532880, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (53116105..53140661, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene coenzyme Q-binding protein COQ10 homolog B, mitochondrial-like Neighboring gene uncharacterized LOC102548571 Neighboring gene selenoprotein P Neighboring gene uncharacterized LOC103691472 Neighboring gene growth hormone receptor Neighboring gene uncharacterized LOC102548637

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 152

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191959.1 → NP_001178888.1  coiled-coil domain-containing protein 152

    See identical proteins and their annotated locations for NP_001178888.1

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    F1M7D1
    Conserved Domains (1) summary
    PLN03229
    Location:42 → 247
    PLN03229; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    54236013..54260531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017591017.3 → XP_017446506.1  coiled-coil domain-containing protein 152 isoform X4

    UniProtKB/TrEMBL
    A0A8I5Y1T3
    Related
    ENSRNOP00000077613.2, ENSRNOT00000107976.2

  2. XM_006231988.5 → XP_006232050.1  coiled-coil domain-containing protein 152 isoform X2

    See identical proteins and their annotated locations for XP_006232050.1

    UniProtKB/TrEMBL
    F1M7D1
    Related
    ENSRNOP00000057234.2, ENSRNOT00000060492.5
    Conserved Domains (1) summary
    PLN03229
    Location:42 → 247
    PLN03229; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

  3. XM_063282349.1 → XP_063138419.1  coiled-coil domain-containing protein 152 isoform X3

  4. XM_063282348.1 → XP_063138418.1  coiled-coil domain-containing protein 152 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases
Research Materials