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A630001G21Rikl RIKEN cDNA A630001G21 gene like [ Rattus norvegicus (Norway rat) ]

Gene ID: 501176, updated on 9-Dec-2024

Summary

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Official Symbol
A630001G21Riklprovided by RGD
Official Full Name
RIKEN cDNA A630001G21 gene likeprovided by RGD
Primary source
RGD:1563917
See related
EnsemblRapid:ENSRNOG00000017273 AllianceGenome:RGD:1563917
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563917
Summary
Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Spleen (RPKM 56.2), Thymus (RPKM 14.8) and 2 other tissues See more
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Genomic context

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See A630001G21Rikl in Genome Data Viewer
Location:
9q35
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (93831074..93853415, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (86381777..86405385, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (92753666..92775830, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene SP110 nuclear body protein Neighboring gene SP140 nuclear body protein Neighboring gene SP100 nuclear antigen Neighboring gene uncharacterized LOC103690562 Neighboring gene ribosomal protein S10, pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nuclear autoantigen Sp-100; nuclear body protein SP140-like protein; sp110 nuclear body protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    93831074..93853415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063268166.1 → XP_063124236.1  sp110 nuclear body protein isoform X7

  2. XM_056984623.2 → XP_056840603.1  sp110 nuclear body protein isoform X2

  3. XM_056984628.2 → XP_056840608.1  nuclear body protein SP140-like protein isoform X6

  4. XM_056984626.2 → XP_056840606.1  nuclear autoantigen Sp-100 isoform X4

  5. XM_056984622.2 → XP_056840602.1  nuclear autoantigen Sp-100 isoform X1

    UniProtKB/TrEMBL
    D4ACI5
    Related
    ENSRNOP00000036936.7, ENSRNOT00000029635.8

  6. XM_056984627.2 → XP_056840607.1  nuclear autoantigen Sp-100 isoform X5

  7. XM_056984625.2 → XP_056840605.1  nuclear body protein SP140-like protein isoform X3

Nucleotide Protein Strain
Heading Accession and Version

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