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Prr33 proline rich 33 [ Rattus norvegicus (Norway rat) ]

Gene ID: 685580, updated on 9-Dec-2024

Summary

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Official Symbol
Prr33provided by RGD
Official Full Name
proline rich 33provided by RGD
Primary source
RGD:1592568
See related
EnsemblRapid:ENSRNOG00000051534 AllianceGenome:RGD:1592568
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to act upstream of or within response to wounding. Orthologous to human PRR33 (proline rich 33). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Muscle (RPKM 209.5), Heart (RPKM 50.1) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Prr33 in Genome Data Viewer
Location:
1q41
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (207074382..207080233, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (197644903..197650774, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (215658996..215666512, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene troponin I2, fast skeletal type Neighboring gene RNA, U6 small nuclear 81 Neighboring gene synaptotagmin 8 Neighboring gene lymphocyte-specific protein 1 Neighboring gene troponin T3, fast skeletal type Neighboring gene mitochondrial ribosomal protein L23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Identification of candidate long non-coding RNAs in response to myocardial infarction. Zangrando J, et al. BMC Genomics, 2014 Jun 10. PMID 24917243, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
acts_upstream_of_or_within response to wounding ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
proline rich 33; proline-rich protein 33

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432564.1 → NP_001419493.1  proline rich 33 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A0G2K2F1

  2. NM_001432565.1 → NP_001419494.1  proline rich 33 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A0G2K2F1

  3. NM_001432566.1 → NP_001419495.1  proline rich 33 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  4. NM_001432567.1 → NP_001419496.1  proline rich 33 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    207074382..207080233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001064406.8 → XP_001064406.1  proline-rich protein 33 isoform X1

    Conserved Domains (1) summary
    pfam15485
    Location:193 → 438
    DUF4643; Domain of unknown function (DUF4643)

  2. XM_008760181.4 → XP_008758403.1  proline-rich protein 33 isoform X1

    Related
    ENSRNOP00000072220.2, ENSRNOT00000079442.3
    Conserved Domains (1) summary
    pfam15485
    Location:193 → 438
    DUF4643; Domain of unknown function (DUF4643)

  3. XM_063281023.1 → XP_063137093.1  proline-rich protein 33 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials