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Cd209c CD209c molecule [ Rattus norvegicus (Norway rat) ]

Gene ID: 688951, updated on 4-Jan-2025

Summary

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Official Symbol
Cd209cprovided by RGD
Official Full Name
CD209c moleculeprovided by RGD
Primary source
RGD:1582956
See related
EnsemblRapid:ENSRNOG00000042807 AllianceGenome:RGD:1582956
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Cd209
Summary
Predicted to enable D-mannose binding activity and pattern recognition receptor activity. Predicted to be involved in immune response. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in Coronavirus infectious disease; aspergillosis; dengue disease (multiple); human immunodeficiency virus infectious disease (multiple); and tuberculosis (multiple). Orthologous to human CD209 (CD209 molecule). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Spleen (RPKM 4.8) and Thymus (RPKM 2.5) See more
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Genomic context

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See Cd209c in Genome Data Viewer
Location:
12p12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (6732890..6741757, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (1936233..1943841, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (2837991..2846709, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene CD209d molecule Neighboring gene C-type lectin domain family 4 member M Neighboring gene CD209a molecule like 1 Neighboring gene RAN binding protein 1, pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Paradoxical role of CD16+CCR2+CCR5+ monocytes in tuberculosis: efficient APC in pleural effusion but also mark disease severity in blood. Balboa L, et al. J Leukoc Biol, 2011 Jul. PMID 21454357
  2. Pulmonary dendritic cells in lungs of preterm infants: neglected participants in bronchopulmonary dysplasia? De Paepe ME, et al. Pediatr Dev Pathol, 2011 Jan-Feb. PMID 20050784
  3. Dendritic cell recruitment in lesions of human and experimental pulmonary hypertension. Perros F, et al. Eur Respir J, 2007 Mar. PMID 17107989
  4. Mite allergen decreases DC-SIGN expression and modulates human dendritic cell differentiation and function in allergic asthma. Huang HJ, et al. Mucosal Immunol, 2011 Sep. PMID 21471959
  5. N-linked glycosylation facilitates sialic acid-independent attachment and entry of influenza A viruses into cells expressing DC-SIGN or L-SIGN. Londrigan SL, et al. J Virol, 2011 Mar. PMID 21191006, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables D-mannose binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables pattern recognition receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
CD209 antigen-like protein C
Names
CD209c antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431939.1 → NP_001418868.1  CD209 antigen-like protein C

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    6732890..6741757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006248792.5 → XP_006248854.1  CD209 antigen-like protein C

    Related
    ENSRNOP00000105417.1, ENSRNOT00000162358.1
    Conserved Domains (1) summary
    cd03590
    Location:110 → 232
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001191095.1: Suppressed sequence

    Description
    NM_001191095.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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