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Lypd8l2 LY6/PLAUR domain containing 8 like 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691352, updated on 27-Nov-2024

Summary

Official Symbol
Lypd8l2provided by RGD
Official Full Name
LY6/PLAUR domain containing 8 like 2provided by RGD
Primary source
RGD:1585065
See related
EnsemblRapid:ENSRNOG00000038422 AllianceGenome:RGD:1585065
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Liver (RPKM 21.0), Uterus (RPKM 10.3) and 2 other tissues See more
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Genomic context

See Lypd8l2 in Genome Data Viewer
Location:
10q22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (43490649..43495697, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (42990237..42995285, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (44238354..44243402, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 2 subfamily T member 29B, pseudogene 1 Neighboring gene olfactory receptor family 2 subfamily AB member 1 Neighboring gene olfactory receptor family 11 subfamily L member 3 Neighboring gene tripartite motif-containing 58

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109638.1NP_001103108.1  Protein RoBo-1-like precursor

    See identical proteins and their annotated locations for NP_001103108.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473948
    UniProtKB/TrEMBL
    A6HEU6, D3ZFP5
    Related
    ENSRNOP00000055313.2, ENSRNOT00000058517.4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    43490649..43495697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)