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    Armcx1 armadillo repeat containing, X-linked 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501619, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Armcx1provided by RGD
    Official Full Name
    armadillo repeat containing, X-linked 1provided by RGD
    Primary source
    RGD:1561629
    See related
    EnsemblRapid:ENSRNOG00000046862 AllianceGenome:RGD:1561629
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to act upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Orthologous to human ARMCX1 (armadillo repeat containing X-linked 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 117.9), Lung (RPKM 93.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Armcx1 in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (102192225..102196130)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (97898969..97902874)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (105535670..105539575)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing, X-linked 4 Neighboring gene ribosomal protein S29, pseudogene 8 Neighboring gene protein ARMCX6-like Neighboring gene armadillo repeat containing, X-linked 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    acts_upstream_of_or_within hematopoietic stem cell homeostasis ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    armadillo repeat-containing X-linked protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024367.1 → NP_001019538.1  armadillo repeat-containing X-linked protein 1

      See identical proteins and their annotated locations for NP_001019538.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085780
      UniProtKB/Swiss-Prot
      Q5U310
      UniProtKB/TrEMBL
      A6IVG9
      Related
      ENSRNOP00000043675.3, ENSRNOT00000052422.7
      Conserved Domains (1) summary
      pfam04826
      Location:204 → 445
      Arm_2; Armadillo-like

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      102192225..102196130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006257243.5 → XP_006257305.1  armadillo repeat-containing X-linked protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006257305.1

      UniProtKB/Swiss-Prot
      Q5U310
      UniProtKB/TrEMBL
      A6IVG9
      Related
      ENSRNOP00000108980.1, ENSRNOT00000139244.1
      Conserved Domains (1) summary
      pfam04826
      Location:204 → 445
      Arm_2; Armadillo-like

    2. XM_039099980.2 → XP_038955908.1  armadillo repeat-containing X-linked protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q5U310
      UniProtKB/TrEMBL
      A6IVG9
      Conserved Domains (1) summary
      pfam04826
      Location:204 → 445
      Arm_2; Armadillo-like
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5U310.1 GenPept UniProtKB/Swiss-Prot:Q5U310

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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