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    Pbdc1 polysaccharide biosynthesis domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363485, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Pbdc1provided by RGD
    Official Full Name
    polysaccharide biosynthesis domain containing 1provided by RGD
    Primary source
    RGD:1562502
    See related
    EnsemblRapid:ENSRNOG00000002662 AllianceGenome:RGD:1562502
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562502
    Summary
    Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 67.2), Brain (RPKM 51.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Pbdc1 in Genome Data Viewer
    Location:
    Xq22
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (74219713..74275954)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (70154106..70197827)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (76042239..76092964)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS8-like Neighboring gene uncharacterized LOC100912991 Neighboring gene SWI5-dependent homologous recombination repair protein 1, pseudogene 2 Neighboring gene ribosomal protein L19, pseudogene 22 Neighboring gene MAGE family member E1 Neighboring gene trafficking protein particle complex subunit 13-like Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein PBDC1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108818.1 → NP_001102288.1  protein PBDC1

      See identical proteins and their annotated locations for NP_001102288.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473969
      UniProtKB/TrEMBL
      A0A8I6AQ18, A0A8I6GM43, A6IV25
      Related
      ENSRNOP00000003667.6, ENSRNOT00000003667.7
      Conserved Domains (1) summary
      pfam04669
      Location:35 → 158
      Polysacc_synt_4; Polysaccharide biosynthesis

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      74219713..74275954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008773349.4 → XP_008771571.1  protein PBDC1 isoform X1

      UniProtKB/TrEMBL
      G3V6C3
      Conserved Domains (1) summary
      cl04661
      Location:35 → 136
      Polysacc_synt_4; Polysaccharide biosynthesis

    2. XM_063280150.1 → XP_063136220.1  protein PBDC1 isoform X2

      UniProtKB/TrEMBL
      G3V6C3
    Nucleotide Protein Strain
    Heading Accession and Version

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