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    Skida1 SKI/DACH domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680770, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Skida1provided by RGD
    Official Full Name
    SKI/DACH domain containing 1provided by RGD
    Primary source
    RGD:1588196
    See related
    EnsemblRapid:ENSRNOG00000033330 AllianceGenome:RGD:1588196
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human SKIDA1 (SKI/DACH domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 32.8), Heart (RPKM 21.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Skida1 in Genome Data Viewer
    Location:
    17q12.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (85706693..85717499, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (80798241..80809062, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (84827089..84834838, complement)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene actin, beta, pseudogene 3 Neighboring gene uncharacterized LOC102553115 Neighboring gene uncharacterized LOC108353137 Neighboring gene MLLT10, histone lysine methyltransferase DOT1L cofactor Neighboring gene DnaJ heat shock protein family (Hsp40) member C1 Neighboring gene uncharacterized LOC108348596

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    SKI/DACH domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001400778.1 → NP_001387707.1  SKI/DACH domain-containing protein 1

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/TrEMBL
      F1LXY5
      Related
      ENSRNOP00000110702.1, ENSRNOT00000134428.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      85706693..85717499 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039096192.2 → XP_038952120.1  SKI/DACH domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F1LXY5
      Related
      ENSRNOP00000110467.1, ENSRNOT00000154352.1
      Conserved Domains (2) summary
      pfam15223
      Location:470 → 817
      DUF4584; Domain of unknown function (DUF4584)
      cd21082
      Location:6 → 96
      DHD_SKIDA1; Dachshund-homology domain found in SKI/DACH domain-containing protein 1 (SKIDA1) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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