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    Rbm48 RNA binding motif protein 48 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 296840, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rbm48provided by RGD
    Official Full Name
    RNA binding motif protein 48provided by RGD
    Primary source
    RGD:1310794
    See related
    EnsemblRapid:ENSRNOG00000008980 AllianceGenome:RGD:1310794
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310794
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to be part of spliceosomal complex. Predicted to be active in nucleoplasm. Orthologous to human RBM48 (RNA binding motif protein 48). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 60.3), Liver (RPKM 54.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rbm48 in Genome Data Viewer
    Location:
    4q13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (31513811..31524149)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (30559063..30569409)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (27698319..27708572)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene GATA zinc finger domain containing 1 Neighboring gene peroxisomal biogenesis factor 1 Neighboring gene RIKEN cDNA 1700109H08 gene like Neighboring gene family with sequence similarity 133, member B Neighboring gene uncharacterized LOC134486561 Neighboring gene cyclin-dependent kinase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC112752

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding protein 48
    Names
    UPF0712 protein C7orf64 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024246.1 → NP_001019417.1  RNA-binding protein 48

      See identical proteins and their annotated locations for NP_001019417.1

      Status: PROVISIONAL

      Source sequence(s)
      BC093393
      UniProtKB/Swiss-Prot
      Q561R3
      UniProtKB/TrEMBL
      A0A8L2UIF0, A6K286
      Related
      ENSRNOP00000012086.6, ENSRNOT00000012086.8
      Conserved Domains (1) summary
      cd12442
      Location:36 → 135
      RRM_RBM48; RNA recognition motif (RRM) found in RNA-binding protein 48 (RBM48) and similar proteins

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      31513811..31524149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107254.2 → XP_038963182.1  RNA-binding protein 48 isoform X1

      Related
      ENSRNOP00000111918.1, ENSRNOT00000121892.1
      Conserved Domains (1) summary
      cl17169
      Location:72 → 110
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q561R3.1 GenPept UniProtKB/Swiss-Prot:Q561R3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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