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    Zswim3 zinc finger, SWIM-type containing 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311630, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zswim3provided by RGD
    Official Full Name
    zinc finger, SWIM-type containing 3provided by RGD
    Primary source
    RGD:1309789
    See related
    EnsemblRapid:ENSRNOG00000015525 AllianceGenome:RGD:1309789
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable zinc ion binding activity. Orthologous to human ZSWIM3 (zinc finger SWIM-type containing 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 40.7), Thymus (RPKM 40.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zswim3 in Genome Data Viewer
    Location:
    3q42
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (173962078..173977360)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (153542741..153558022)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (161272385..161287667)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene troponin C2, fast skeletal type Neighboring gene sorting nexin family member 21 Neighboring gene acyl-CoA thioesterase 8 Neighboring gene zinc finger, SWIM-type containing 1 Neighboring gene spermatogenesis associated 25 Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene cathepsin A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger SWIM domain-containing protein 3
    Names
    zinc finger, SWIM domain containing 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107801.1 → NP_001101271.1  zinc finger SWIM domain-containing protein 3

      See identical proteins and their annotated locations for NP_001101271.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474005
      UniProtKB/TrEMBL
      A6JXB7, D4AC07
      Related
      ENSRNOP00000021052.4, ENSRNOT00000021052.7
      Conserved Domains (1) summary
      pfam04434
      Location:548 → 571
      SWIM; SWIM zinc finger

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      173962078..173977360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039105132.2 → XP_038961060.1  zinc finger SWIM domain-containing protein 3 isoform X1

      Conserved Domains (1) summary
      pfam04434
      Location:365 → 402
      SWIM; SWIM zinc finger

    2. XM_039105133.2 → XP_038961061.1  zinc finger SWIM domain-containing protein 3 isoform X1

      Conserved Domains (1) summary
      pfam04434
      Location:365 → 402
      SWIM; SWIM zinc finger
    Nucleotide Protein Strain
    Heading Accession and Version

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