Kbtbd12 kelch repeat and BTB domain containing 12 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Kbtbd12provided by RGD
Official Full Name: kelch repeat and BTB domain containing 12provided by RGD
Primary source: RGD:1585999
See related: EnsemblRapid:ENSRNOG00000061868 AllianceGenome:RGD:1585999
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human KBTBD12 (kelch repeat and BTB domain containing 12). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Muscle (RPKM 207.9) and Heart (RPKM 93.7) See more
Orthologs: human mouse all
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Genomic context

Location:: 4q34

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	4	NC_086022.1 (122571903..122645895, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	4	NC_051339.1 (121014636..121088701, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	4	NC_005103.4 (120492541..120567755, complement)

Chromosome 4 - NC_086022.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables ubiquitin-like ligase-substrate adaptor activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of Cul3-RING ubiquitin ligase complex	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: kelch repeat and BTB domain containing 12; kelch repeat and BTB domain-containing protein 12

Names: kelch repeat and BTB (POZ) domain containing 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001431870.1 → NP_001418799.1 kelch repeat and BTB domain containing 12

Status: VALIDATED

Source sequence(s)

JAXUCZ010000004

UniProtKB/TrEMBL

A0A0G2K982, D3ZQ37

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086022.1 Reference GRCr8

Range

122571903..122645895 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_003749799.6 → XP_003749847.1 kelch repeat and BTB domain-containing protein 12 isoform X1

Related

ENSRNOP00000069816.2, ENSRNOT00000079575.3

Conserved Domains (6) summary

smart00612
Location:437 → 491

Kelch; Kelch domain

PHA03098
Location:29 → 586

PHA03098; kelch-like protein; Provisional

sd00038
Location:375 → 422

Kelch; KELCH repeat [structural motif]

pfam00651
Location:26 → 124

BTB; BTB/POZ domain

pfam01344
Location:483 → 534

Kelch_1; Kelch motif

pfam07707
Location:133 → 235

BACK; BTB And C-terminal Kelch
XM_039108733.2 → XP_038964661.1 kelch repeat and BTB domain-containing protein 12 isoform X2

UniProtKB/TrEMBL

A0A0G2K982

Conserved Domains (4) summary

PHA03098
Location:29 → 561

PHA03098; kelch-like protein; Provisional

sd00038
Location:375 → 422

Kelch; KELCH repeat [structural motif]

cd18485
Location:128 → 226

BACK_KBTBD12; BACK (BTB and C-terminal Kelch) domain found in Kelch repeat and BTB domain-containing protein 12 (KBTBD12)

cl38908
Location:10 → 136

BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily