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    Spata46 spermatogenesis associated 46 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498274, updated on 9-Dec-2024

    Summary

    Official Symbol
    Spata46provided by RGD
    Official Full Name
    spermatogenesis associated 46provided by RGD
    Primary source
    RGD:1565283
    See related
    EnsemblRapid:ENSRNOG00000002972 AllianceGenome:RGD:1565283
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565283
    Summary
    Predicted to be involved in fusion of sperm to egg plasma membrane involved in single fertilization and spermatogenesis. Predicted to be active in nuclear membrane. Orthologous to human SPATA46 (spermatogenesis associated 46). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 257.3), Kidney (RPKM 29.4) and 6 other tissues See more
    Orthologs
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    Genomic context

    See Spata46 in Genome Data Viewer
    Location:
    13q24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (85073942..85077567)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (82541183..82544808)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (88644520..88648145)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene SH2 domain containing 1B Neighboring gene similar to human chromosome 1 open reading frame 226 Neighboring gene nitric oxide synthase 1 adaptor protein Neighboring gene uncharacterized LOC120096313 Neighboring gene uncharacterized LOC102550090

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in nuclear membrane  
    located_in nuclear membrane  

    General protein information

    Preferred Names
    spermatogenesis-associated protein 46
    Names
    uncharacterized protein C1orf111 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109074.1 → NP_001102544.1  spermatogenesis-associated protein 46

      See identical proteins and their annotated locations for NP_001102544.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473958
      UniProtKB/TrEMBL
      A6IDP4, D3ZEQ6
      Related
      ENSRNOP00000003979.5, ENSRNOT00000003979.7
      Conserved Domains (1) summary
      pfam17734
      Location:1 → 185
      Spt46; Spermatogenesis-associated protein 46

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      85073942..85077567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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