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    Osm oncostatin M [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289747, updated on 27-Dec-2024

    Summary

    Official Symbol
    Osmprovided by RGD
    Official Full Name
    oncostatin Mprovided by RGD
    Primary source
    RGD:1585012
    See related
    EnsemblRapid:ENSRNOG00000024390 AllianceGenome:RGD:1585012
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable cytokine activity; growth factor activity; and oncostatin-M receptor binding activity. Predicted to be involved in several processes, including oncostatin-M-mediated signaling pathway; positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to act upstream of or within several processes, including positive regulation of macromolecule metabolic process; positive regulation of signal transduction; and tyrosine phosphorylation of STAT protein. Predicted to be located in extracellular space. Orthologous to human OSM (oncostatin M). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 21.1), Thymus (RPKM 12.1) and 6 other tissues See more
    Orthologs
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    Genomic context

    See Osm in Genome Data Viewer
    Location:
    14q21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (83327202..83332073)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (79103638..79108500)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (84457487..84469426)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family, member 10a Neighboring gene cytosolic arginine sensor for mTORC1 subunit 1 Neighboring gene LIF, interleukin 6 family cytokine Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables cytokine activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables cytokine activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables growth factor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables oncostatin-M receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within behavioral response to pain ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of meiotic nuclear division ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of hormone secretion ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of meiotic nuclear division ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in oncostatin-M-mediated signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within peripheral nervous system development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of MAPK cascade ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of apoptotic signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of inflammatory response ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of positive regulation of interleukin-17 production ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of peptidyl-serine phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of peptidyl-tyrosine phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of peptidyl-tyrosine phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of tyrosine phosphorylation of STAT protein ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within response to heat ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within tyrosine phosphorylation of STAT protein ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006961.2NP_001006962.1  oncostatin-M precursor

      See identical proteins and their annotated locations for NP_001006962.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/Swiss-Prot
      Q65Z15
      UniProtKB/TrEMBL
      A6IKF8
      Related
      ENSRNOP00000110195.1, ENSRNOT00000139324.1
      Conserved Domains (1) summary
      cl21565
      Location:36196
      LIF_OSM; LIF / OSM family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      83327202..83332073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006251200.4XP_006251262.1  oncostatin-M isoform X1

      See identical proteins and their annotated locations for XP_006251262.1

      UniProtKB/TrEMBL
      A6IKF7
      Related
      ENSRNOP00000111271.1, ENSRNOT00000142525.1
      Conserved Domains (1) summary
      cl21565
      Location:128263
      LIF_OSM; LIF / OSM family
    2. XM_039091735.2XP_038947663.1  oncostatin-M isoform X2

      UniProtKB/TrEMBL
      A6IKF8
      Conserved Domains (1) summary
      cl21565
      Location:15175
      LIF_OSM; LIF / OSM family