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    Tmem179 transmembrane protein 179 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 314472, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem179provided by RGD
    Official Full Name
    transmembrane protein 179provided by RGD
    Primary source
    RGD:1310269
    See related
    EnsemblRapid:ENSRNOG00000013128 AllianceGenome:RGD:1310269
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310269
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM179 (transmembrane protein 179). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 270.3), Brain (RPKM 135.0) and 3 other tissues See more
    Orthologs
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    Genomic context

    See Tmem179 in Genome Data Viewer
    Location:
    6q32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (137390422..137401438, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (131569289..131580413, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (137073684..137084739, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479481 Neighboring gene uncharacterized LOC102549170 Neighboring gene similar to human chromosome 14 open reading frame 180 Neighboring gene uncharacterized LOC102552388 Neighboring gene inverted formin 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126280.1NP_001119752.1  transmembrane protein 179

      See identical proteins and their annotated locations for NP_001119752.1

      Status: PROVISIONAL

      Source sequence(s)
      BC160847
      UniProtKB/TrEMBL
      A6KBV2, B1H238
      Related
      ENSRNOP00000057665.4, ENSRNOT00000060943.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      137390422..137401438 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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