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    Bicdl2 BICD family like cargo adaptor 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302964, updated on 9-Dec-2024

    Summary

    Official Symbol
    Bicdl2provided by RGD
    Official Full Name
    BICD family like cargo adaptor 2provided by RGD
    Primary source
    RGD:1306729
    See related
    EnsemblRapid:ENSRNOG00000003457 AllianceGenome:RGD:1306729
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ccdc64b; RGD1306729
    Summary
    Predicted to enable small GTPase binding activity. Predicted to be involved in Golgi to secretory granule transport and vesicle transport along microtubule. Predicted to be located in cytoplasm. Orthologous to human BICDL2 (BICD family like cargo adaptor 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 21.6), Thymus (RPKM 17.3) and 4 other tissues See more
    Orthologs
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    Genomic context

    See Bicdl2 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (13196205..13204642)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (12691610..12700049)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (12980696..12989133)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene zinc finger and SCAN domain containing 10 Neighboring gene matrix metallopeptidase 25 Neighboring gene uncharacterized LOC102557038 Neighboring gene THO complex subunit 6 Neighboring gene TNF receptor superfamily member 12A Neighboring gene host cell factor C1 regulator 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables small GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in Golgi to secretory granule transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in vesicle transport along microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    BICD family-like cargo adapter 2
    Names
    bicaudal D-related protein 2
    coiled-coil domain containing 64B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106982.1NP_001100452.1  BICD family-like cargo adapter 2

      See identical proteins and their annotated locations for NP_001100452.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      A0A8I6AM60, B1WBT3, F7FE00
      Related
      ENSRNOP00000004638.5, ENSRNOT00000004638.8
      Conserved Domains (1) summary
      cl19219
      Location:191291
      DUF342; Protein of unknown function (DUF342)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      13196205..13204642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)