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    SPATA45 spermatogenesis associated 45 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498316, updated on 9-Dec-2024

    Summary

    Official Symbol
    SPATA45provided by RGD
    Official Full Name
    spermatogenesis associated 45provided by RGD
    Primary source
    RGD:1593182
    See related
    EnsemblRapid:ENSRNOG00000048659 AllianceGenome:RGD:1593182
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    SPATA45l1
    Summary
    Orthologous to human SPATA45 (spermatogenesis associated 45). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 261.0) See more
    Orthologs
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    Genomic context

    See SPATA45 in Genome Data Viewer
    Location:
    13q27
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (105155421..105162321)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (102624298..102631191)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (109645480..109652233)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene vasohibin 2 Neighboring gene FLVCR choline and heme transporter 1 Neighboring gene TatD DNase domain containing 3 Neighboring gene NSL1 component of MIS12 kinetochore complex Neighboring gene uncharacterized LOC120096350

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    spermatogenesis-associated protein 45
    Names
    spermatogenesis associated 45-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109085.1NP_001102555.1  spermatogenesis-associated protein 45

      See identical proteins and their annotated locations for NP_001102555.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473985
      UniProtKB/TrEMBL
      A6JGY2, M0R8J6
      Related
      ENSRNOP00000065792.1, ENSRNOT00000073985.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      105155421..105162321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006250489.5XP_006250551.1  spermatogenesis-associated protein 45 isoform X1

      See identical proteins and their annotated locations for XP_006250551.1

      UniProtKB/TrEMBL
      A6JGY2, M0R8J6
    2. XM_039090999.2XP_038946927.1  spermatogenesis-associated protein 45 isoform X1

      UniProtKB/TrEMBL
      A6JGY2, M0R8J6