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    Kctd19 potassium channel tetramerization domain containing 19 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 291965, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Kctd19provided by RGD
    Official Full Name
    potassium channel tetramerization domain containing 19provided by RGD
    Primary source
    RGD:1561326
    See related
    EnsemblRapid:ENSRNOG00000016760 AllianceGenome:RGD:1561326
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561326
    Summary
    Predicted to be involved in male meiotic nuclear division. Predicted to be located in nucleus. Orthologous to human KCTD19 (potassium channel tetramerization domain containing 19). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 159.8) and Adrenal (RPKM 100.7) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Kctd19 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (50169814..50202121, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (33259869..33292011, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (37338399..37370438, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene formin homology 2 domain containing 1 Neighboring gene solute carrier family 9 member A5 Neighboring gene pleckstrin homology and RhoGEF domain containing G4 Neighboring gene leucine rich repeat containing 36 Neighboring gene tubulin polymerization-promoting protein family member 3 Neighboring gene zinc finger, DHHC-type containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in male meiotic nuclear division ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein KCTD19
    Names
    potassium channel tetramerisation domain containing 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305199.1 → NP_001292128.1  BTB/POZ domain-containing protein KCTD19

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      F1LYX1
      Conserved Domains (1) summary
      cl02518
      Location:18 → 72
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      50169814..50202121 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008772558.4 → XP_008770780.2  BTB/POZ domain-containing protein KCTD19 isoform X1

      UniProtKB/TrEMBL
      F1LYX1
      Related
      ENSRNOP00000022497.6, ENSRNOT00000022497.7

    2. XM_039097610.2 → XP_038953538.1  BTB/POZ domain-containing protein KCTD19 isoform X2

      Conserved Domains (2) summary
      cd18374
      Location:237 → 335
      BTB2_POZ_KCTD19; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 19 (KCTD19)
      cl38908
      Location:19 → 96
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    3. XM_063277913.1 → XP_063133983.1  BTB/POZ domain-containing protein KCTD19 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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