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    Cfap210 cilia and flagella associated protein 210 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311113, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cfap210provided by RGD
    Official Full Name
    cilia and flagella associated protein 210provided by RGD
    Primary source
    RGD:1308818
    See related
    EnsemblRapid:ENSRNOG00000052954 AllianceGenome:RGD:1308818
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ccdc173; RGD1308818
    Summary
    Predicted to be involved in flagellated sperm motility. Predicted to be located in sperm flagellum. Predicted to be active in axonemal B tubule inner sheath. Orthologous to human CFAP210 (cilia and flagella associated protein 210). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 50.7), Lung (RPKM 11.3) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cfap210 in Genome Data Viewer
    Location:
    3q21
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (74928368..74962508, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (54520455..54554677, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (55995728..56030763, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene FAST kinase domains 1 Neighboring gene peptidylprolyl isomerase G Neighboring gene phosphatase, orphan 2 Neighboring gene kelch-like family member 23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in flagellated sperm motility IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in axonemal B tubule inner sheath ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in axonemal microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in axonemal microtubule ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in sperm flagellum IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    cilia- and flagella- associated protein 210
    Names
    coiled-coil domain containing 173
    coiled-coil domain-containing protein 173

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127486.1 → NP_001120958.1  cilia- and flagella- associated protein 210

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      F1MAP6
      Related
      ENSRNOP00000101409.1, ENSRNOT00000134008.1
      Conserved Domains (1) summary
      pfam13868
      Location:142 → 466
      TPH; Trichohyalin-plectin-homology domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      74928368..74962508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039104845.2 → XP_038960773.1  cilia- and flagella- associated protein 210 isoform X1

      Conserved Domains (1) summary
      PTZ00121
      Location:2 → 269
      PTZ00121; MAEBL; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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