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    C4h12orf71 similar to human chromosome 12 open reading frame 71 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690784, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C4h12orf71provided by RGD
    Official Full Name
    similar to human chromosome 12 open reading frame 71provided by RGD
    Primary source
    RGD:1592184
    See related
    EnsemblRapid:ENSRNOG00000026864 AllianceGenome:RGD:1592184
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C12orf71 (chromosome 12 open reading frame 71). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 104.8), Kidney (RPKM 34.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C4h12orf71 in Genome Data Viewer
    Location:
    4q44
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (181599839..181602709, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (179869177..179872125, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (181344632..181351800, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix ARNT like 2 Neighboring gene single-pass membrane protein with coiled-coil domains 2 Neighboring gene PPFIA binding protein 1 Neighboring gene high mobility group protein B1-like Neighboring gene RAB15 effector protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C12orf71 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044299.1 → NP_001037764.1  uncharacterized protein C12orf71 homolog

      See identical proteins and their annotated locations for NP_001037764.1

      Status: PROVISIONAL

      Source sequence(s)
      BC082012
      UniProtKB/Swiss-Prot
      Q66H53
      Conserved Domains (1) summary
      pfam15480
      Location:26 → 294
      DUF4640; Domain of unknown function (DUF4640)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      181599839..181602709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108391.2 → XP_038964319.1  uncharacterized protein C12orf71 homolog isoform X2

      Conserved Domains (1) summary
      pfam15480
      Location:18 → 261
      DUF4640; Domain of unknown function (DUF4640)

    2. XM_008763426.4 → XP_008761648.1  uncharacterized protein C12orf71 homolog isoform X1

      See identical proteins and their annotated locations for XP_008761648.1

      UniProtKB/TrEMBL
      A0A8L2UKV6, A6IN36
      Related
      ENSRNOP00000031574.5, ENSRNOT00000033743.6
      Conserved Domains (1) summary
      pfam15480
      Location:18 → 301
      DUF4640; Domain of unknown function (DUF4640)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66H53.1 GenPept UniProtKB/Swiss-Prot:Q66H53

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