U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Dhrs7l1 dehydrogenase/reductase (SDR family) member 7-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299131, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Dhrs7l1provided by RGD
    Official Full Name
    dehydrogenase/reductase (SDR family) member 7-like 1provided by RGD
    Primary source
    RGD:1308036
    See related
    EnsemblRapid:ENSRNOG00000025648 AllianceGenome:RGD:1308036
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Dhrs7; DR-NR#3
    Summary
    Predicted to enable oxidoreductase activity. Orthologous to human DHRS7 (dehydrogenase/reductase 7). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 479.0), Kidney (RPKM 365.6) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Dhrs7l1 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (97025094..97047899, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (91289200..91312010, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (95387709..95502845, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene pecanex 4 like 1 Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene dehydrogenase/reductase 7 Neighboring gene ubiquitin-conjugating enzyme E2E 3, pseudogene 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene expression variance based on random sequencing in rat remnant kidney. Horiba N, et al. Kidney Int, 2004 Jul. PMID 15200410
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC124901

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    dehydrogenase/reductase (SDR family) member 7-like 1
    Names
    Down-regulated in nephrectomized rat kidney #3
    dehydrogenase/reductase (SDR family) member 7

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013098.1 → NP_001013116.1  dehydrogenase/reductase (SDR family) member 7-like 1

      See identical proteins and their annotated locations for NP_001013116.1

      Status: PROVISIONAL

      Source sequence(s)
      AB108671
      UniProtKB/TrEMBL
      M0R4N4, Q6I7R1
      Related
      ENSRNOP00000036519.2, ENSRNOT00000034289.4
      Conserved Domains (2) summary
      cd05332
      Location:47 → 305
      11beta-HSD1_like_SDR_c; 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs
      pfam00106
      Location:50 → 247
      adh_short; short chain dehydrogenase

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      97025094..97047899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools